Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.4e-101 372.9 180 100.0
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 3.3e-13 79.3 49 83.7
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.1e-12 76.6 53 79.2
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 8.0e-12 74.7 55 74.5
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 1.1e-11 74.3 42 90.5
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.8e-11 73.6 108 47.2
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.3e-11 73.2 93 53.8
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 2.3e-11 73.2 50 78.0
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.1e-11 72.8 41 92.7
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 4.0e-11 72.4 54 75.9
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 5.2e-11 72.0 55 74.5
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.5e-10 70.5 42 88.1
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.5e-10 70.5 55 70.9
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.0e-10 70.1 41 90.2
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 2.6e-10 69.7 52 76.9
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 2.6e-10 69.7 52 76.9
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 3.4e-10 69.3 41 90.2
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 3.4e-10 69.3 54 74.1
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 4.4e-10 68.9 58 67.2
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 4.4e-10 68.9 51 78.4
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 5.8e-10 68.6 44 81.8
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 5.8e-10 68.6 55 70.9
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 5.8e-10 68.6 58 70.7
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 7.5e-10 68.2 50 78.0
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 9.8e-10 67.8 53 75.5
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 9.8e-10 67.8 41 87.8
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.3e-09 67.4 52 76.9
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 1.7e-09 67.0 42 83.3
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.7e-09 67.0 59 69.5
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.2e-09 66.6 50 76.0
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 2.9e-09 66.2 45 80.0
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 4.9e-09 65.5 42 83.3
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 4.9e-09 65.5 42 83.3
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 4.9e-09 65.5 42 83.3
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 4.9e-09 65.5 42 83.3
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 4.9e-09 65.5 55 70.9
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 4.9e-09 65.5 51 74.5
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 4.9e-09 65.5 42 83.3
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 6.4e-09 65.1 42 83.3
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 6.4e-09 65.1 42 81.0
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 6.4e-09 65.1 42 85.7
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 6.4e-09 65.1 42 85.7
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 6.4e-09 65.1 41 85.4
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 6.4e-09 65.1 42 85.7
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 6.4e-09 65.1 42 85.7
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 8.3e-09 64.7 66 60.6
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.9e-08 63.5 41 82.9
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 1.9e-08 63.5 57 66.7
Dinv27233 Davidia involucrata HOM05D012872 ORTHO05D005672 1.9e-08 63.5 42 76.2
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.9e-08 63.5 55 70.9
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 2.4e-08 63.2 58 70.7
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 2.4e-08 63.2 53 73.6
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.4e-08 63.2 53 73.6
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 3.2e-08 62.8 51 68.6
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 4.1e-08 62.4 50 72.0
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 4.1e-08 62.4 55 67.3
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.1e-08 62.4 46 76.1
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.1e-08 62.4 44 77.3
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.4e-08 62.0 43 79.1
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.4e-08 62.0 43 79.1
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 5.4e-08 62.0 53 73.6
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 7.0e-08 61.6 55 69.1
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 9.2e-08 61.2 57 66.7
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 1.6e-07 60.5 43 79.1
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 1.6e-07 60.5 43 79.1
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.6e-07 60.5 53 73.6
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 2.0e-07 60.1 41 78.0
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 2.0e-07 60.1 51 70.6
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.0e-07 60.1 54 68.5
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 2.7e-07 59.7 43 79.1
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 2.7e-07 59.7 40 80.0
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 2.7e-07 59.7 40 80.0
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 2.7e-07 59.7 52 69.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 2.7e-07 59.7 43 81.4
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 2.7e-07 59.7 51 70.6
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 3.5e-07 59.3 42 81.0
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 6.0e-07 58.5 42 78.6
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 6.0e-07 58.5 55 67.3
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 1.0e-06 57.8 53 67.9
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 1.0e-06 57.8 52 71.2
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 1.0e-06 57.8 55 63.6
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-06 57.4 51 68.6
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.3e-06 57.4 51 68.6
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 1.7e-06 57.0 56 67.9
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.3e-06 56.6 46 69.6
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 2.3e-06 56.6 52 73.1
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 2.3e-06 56.6 51 68.6
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 3.0e-06 56.2 43 74.4
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 3.0e-06 56.2 56 64.3
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.0e-06 56.2 46 71.7
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 3.0e-06 56.2 42 78.6
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 3.9e-06 55.8 41 78.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 3.9e-06 55.8 41 78.0
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 3.9e-06 55.8 42 76.2
Dinv02451 Davidia involucrata HOM05D012872 ORTHO05D005672 3.9e-06 55.8 36 75.0
Dinv09722 Davidia involucrata HOM05D012872 ORTHO05D005672 3.9e-06 55.8 38 71.1
Dinv15330 Davidia involucrata HOM05D012872 ORTHO05D005672 3.9e-06 55.8 38 71.1
Dinv18792 Davidia involucrata HOM05D012872 ORTHO05D005672 3.9e-06 55.8 36 75.0
Dinv18799 Davidia involucrata HOM05D012872 ORTHO05D005672 3.9e-06 55.8 36 75.0
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 3.9e-06 55.8 50 68.0
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 5.0e-06 55.5 56 67.9
Dinv15350 Davidia involucrata HOM05D012872 ORTHO05D005672 6.6e-06 55.1 31 83.9
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 8.6e-06 54.7 39 79.5
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 8.6e-06 54.7 43 74.4
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 8.6e-06 54.7 58 62.1


User provided reference genes

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