Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 2.2e-149 532.3 280 100.0
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.2e-116 422.2 280 80.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.2e-116 421.8 280 80.4
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 7.9e-115 417.5 294 78.2
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 7.9e-115 417.5 283 79.9
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.9e-113 412.9 300 75.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 3.7e-112 408.7 280 77.9
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.2e-110 403.7 279 76.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 5.8e-110 401.4 280 75.4
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.3e-109 400.2 280 75.4
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.8e-109 398.7 327 67.9
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 6.4e-109 397.9 279 74.9
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.1e-108 397.1 278 75.5
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.4e-108 396.7 279 74.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.9e-108 396.4 278 75.2
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 5.5e-108 394.8 280 73.2
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.7e-107 392.5 280 72.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.7e-107 392.5 280 71.8
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 6.0e-107 391.3 293 72.0
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.8e-106 389.8 280 73.6
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.8e-106 389.8 280 72.1
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.8e-106 389.8 279 73.8
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.8e-106 389.8 280 71.8
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 3.0e-106 389.0 279 72.4
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 7.4e-105 384.4 278 72.3
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 9.6e-105 384.0 280 73.2
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 9.6e-105 384.0 279 72.4
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.1e-104 382.9 280 71.8
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.7e-104 382.1 280 70.7
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.4e-103 380.2 280 70.7
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-103 380.2 280 70.7
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.4e-103 379.4 280 70.0
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 5.3e-103 378.3 280 70.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 6.9e-103 377.9 278 71.6
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 9.0e-103 377.5 278 70.9
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.2e-102 377.1 353 60.6
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 3.4e-102 375.6 280 68.9
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.8e-102 374.8 280 70.0
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.9e-101 372.5 280 69.3
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 8.4e-101 370.9 295 67.5
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.1e-100 370.5 280 70.4
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-100 370.5 280 68.9
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.4e-100 370.2 277 69.7
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.1e-100 367.9 280 69.6
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.3e-98 363.6 278 69.4
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.1e-98 361.7 304 64.8
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 5.1e-98 361.7 280 69.3
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 3.3e-97 359.0 401 55.1
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 4.3e-97 358.6 280 68.2
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 3.7e-96 355.5 280 67.9
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.1e-95 354.0 277 68.6
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.8e-95 353.2 278 66.2
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.1e-95 352.4 278 66.9
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 9.0e-95 350.9 280 67.5
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.2e-94 350.5 280 64.3
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 3.4e-94 349.0 279 64.9
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 4.5e-94 348.6 271 67.9
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 1.7e-93 346.7 278 64.4
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.2e-93 346.3 241 76.3
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 6.5e-93 344.7 278 64.0
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.9e-92 343.2 278 64.7
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.2e-92 342.0 278 64.7
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 7.2e-92 341.3 282 64.9
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.7e-91 339.3 278 63.3
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 6.1e-91 338.2 278 62.9
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 7.9e-91 337.8 241 74.7
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-90 337.4 280 64.6
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 1.8e-90 336.7 241 72.2
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.3e-90 336.3 241 74.7
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.0e-90 335.9 280 62.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 3.0e-90 335.9 278 62.2
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 3.9e-90 335.5 308 60.4
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.2e-88 329.7 295 59.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.4e-87 327.0 388 50.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.1e-87 325.5 226 73.5
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 9.1e-87 324.3 277 59.6
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.2e-86 323.9 275 61.8
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.5e-86 323.6 306 59.5
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.3e-85 320.5 279 60.9
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.3e-85 320.5 275 64.0
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.7e-85 320.1 280 60.7
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.7e-85 320.1 278 63.7
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.2e-85 319.7 280 60.7
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.9e-85 319.3 278 60.8
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 2.9e-85 319.3 280 60.7
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 3.8e-85 318.9 280 61.1
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 6.5e-85 318.2 278 59.7
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 8.5e-85 317.8 280 60.0
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-84 317.4 277 59.9
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.1e-84 317.4 277 59.9
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.1e-84 317.4 429 47.6
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 2.5e-84 316.2 277 59.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 3.2e-84 315.8 316 55.1
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 7.2e-84 314.7 277 59.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 7.2e-84 314.7 306 58.2
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 9.4e-84 314.3 280 59.3
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 2.1e-83 313.2 281 59.4
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 6.1e-83 311.6 252 65.9
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 7.9e-83 311.2 280 59.3
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 7.9e-83 311.2 253 64.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.5e-81 307.0 188 88.8
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 3.3e-81 305.8 290 56.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 4.8e-80 302.0 300 55.3
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 7.7e-78 294.7 253 62.1
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.3e-77 293.9 265 60.8
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.2e-77 293.1 241 63.1
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.5e-77 291.6 272 62.1
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 8.5e-77 291.2 253 62.8
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.5e-76 290.4 243 65.4
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.2e-76 288.1 241 63.1
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 6.1e-75 285.0 242 63.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 3.0e-74 282.7 280 55.7
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 8.2e-72 274.6 242 63.6
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.6e-70 270.4 242 60.7
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 2.9e-69 266.2 287 50.5
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.8e-66 256.9 242 59.9
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.2e-65 254.2 285 49.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 5.7e-65 251.9 237 56.1
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.3e-64 250.8 241 61.4
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 9.1e-63 244.6 164 73.8
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.2e-59 234.2 234 55.1
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 3.6e-59 232.6 156 74.4
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.7e-53 213.8 128 80.5
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 3.3e-52 209.5 161 68.9
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 7.2e-52 208.4 227 54.2
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.3e-50 203.4 203 53.7
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 3.0e-50 203.0 170 67.1
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 8.9e-50 201.4 280 46.1
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.8e-47 193.7 189 56.1
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.3e-45 186.8 172 59.9
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.1e-43 180.3 115 75.7
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.1e-43 180.3 115 75.7
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-42 177.2 138 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 6.8e-42 175.3 273 39.6
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.5e-41 174.1 263 41.4
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 8.3e-40 168.3 276 38.0
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.9e-36 157.1 244 40.2
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 4.3e-36 156.0 119 71.4
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 3.4e-33 146.4 104 69.2
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 4.4e-33 146.0 233 42.9
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.9e-29 132.9 141 55.3
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-24 117.9 177 41.8
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.7e-21 107.5 201 38.8
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 5.8e-17 92.4 284 31.3
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.7e-16 90.9 86 55.8
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.0e-09 67.4 51 70.6
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.7e-08 64.3 55 63.6
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 3.5e-06 56.6 162 32.7


User provided reference genes

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