Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 4.6e-135 484.6 245 100.0
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 6.3e-76 288.1 244 63.9
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 2.9e-73 279.3 238 61.3
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 1.1e-72 277.3 237 61.2
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 5.3e-67 258.5 246 58.5
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.6e-66 256.9 237 58.2
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.0e-66 256.5 240 59.2
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.0e-62 244.2 247 57.1
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.4e-62 243.8 241 58.1
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 5.9e-58 228.4 237 54.9
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.9e-58 228.4 236 53.4
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.0e-57 227.6 235 52.8
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.9e-57 226.1 239 53.1
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.2e-55 220.7 238 50.0
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 8.0e-55 218.0 235 53.2
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.4e-54 217.2 239 54.0
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.3e-54 216.5 236 51.3
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 6.8e-54 214.9 236 50.8
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 8.3e-52 208.0 245 52.2
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.2e-50 204.1 169 63.3
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.0e-49 201.1 236 49.2
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.0e-49 201.1 236 49.2
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.3e-49 200.7 236 49.2
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 2.8e-47 193.0 236 47.5
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.2e-45 187.6 242 46.7
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.0e-45 186.8 236 46.6
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 4.4e-45 185.7 236 48.3
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 5.7e-45 185.3 236 47.9
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 3.7e-44 182.6 235 46.8
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.4e-44 181.8 244 45.5
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 3.2e-43 179.5 234 46.6
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 4.1e-43 179.1 235 46.8
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 7.0e-43 178.3 235 45.5
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 2.0e-42 176.8 238 45.0
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 3.5e-42 176.0 238 45.0
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.9e-42 175.3 156 59.0
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.3e-41 174.1 166 55.4
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 1.3e-41 174.1 244 46.3
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 3.0e-41 172.9 238 42.0
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.9e-41 172.6 156 58.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.9e-41 172.6 242 43.4
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 8.6e-41 171.4 240 41.7
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.9e-40 170.2 160 56.9
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 3.3e-40 169.5 160 55.6
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.3e-40 168.3 160 55.0
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 9.5e-40 167.9 239 41.8
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.6e-39 167.2 239 41.0
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 2.1e-39 166.8 238 45.0
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 6.2e-39 165.2 234 42.7
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 4.0e-38 162.5 241 43.6
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 6.8e-38 161.8 182 48.9
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 6.8e-38 161.8 231 44.2
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.0e-37 160.2 168 51.2
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.6e-37 159.8 165 52.7
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.3e-36 157.5 228 41.2
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 3.7e-36 156.0 241 39.0
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 8.3e-36 154.8 236 41.9
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.1e-35 154.5 228 40.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.4e-35 154.1 176 48.3
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.4e-35 153.3 239 42.3
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 4.1e-35 152.5 240 39.2
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 9.2e-35 151.4 166 51.2
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.0e-34 150.2 152 53.9
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 2.0e-34 150.2 171 50.3
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 3.5e-34 149.4 164 46.3
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 4.6e-34 149.1 148 49.3
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 6.0e-34 148.7 166 52.4
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 7.8e-34 148.3 236 42.4
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 3.9e-33 146.0 157 49.7
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 5.0e-33 145.6 238 40.3
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 5.0e-33 145.6 146 48.6
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 6.6e-33 145.2 201 46.3
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 8.6e-33 144.8 228 40.4
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.1e-32 144.4 228 40.4
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 1.1e-32 144.4 208 42.3
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 6.2e-31 138.7 228 38.2
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 6.2e-31 138.7 170 45.3
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 2.6e-29 133.3 195 42.6
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 5.8e-29 132.1 228 40.8
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 9.9e-29 131.3 234 36.8
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 3.7e-28 129.4 236 39.0
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 3.7e-28 129.4 239 37.2
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 6.4e-28 128.6 178 39.9
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 1.4e-27 127.5 237 38.4
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.4e-27 126.7 157 41.4
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 3.2e-27 126.3 152 53.9
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 5.4e-27 125.6 157 45.9
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 5.4e-27 125.6 157 47.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 9.2e-27 124.8 238 37.8
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 9.2e-27 124.8 237 38.8
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 9.2e-27 124.8 220 38.6
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.6e-26 124.0 151 46.4
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 2.7e-26 123.2 233 37.3
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.7e-26 123.2 199 40.7
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.5e-26 122.9 238 34.9
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.0e-25 121.3 234 36.3
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.0e-25 121.3 234 36.3
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.7e-25 120.6 148 46.6
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 8.6e-25 118.2 134 50.0
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 1.1e-24 117.9 157 42.7
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 4.3e-24 115.9 198 40.9
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 7.3e-24 115.2 149 47.7
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.2e-23 112.1 103 56.3
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 1.4e-22 110.9 197 39.6
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.4e-22 110.2 153 41.8
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 6.8e-22 108.6 147 44.2
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 8.9e-22 108.2 120 48.3
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.4e-21 105.9 172 40.1
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.3e-20 104.4 153 41.8
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.7e-20 104.0 179 35.2
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 7.1e-19 98.6 125 44.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 8.7e-17 91.7 146 37.0
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 9.6e-16 88.2 196 31.6
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 4.4e-13 79.3 100 43.0
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.9e-12 75.9 86 45.3
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.9e-12 75.9 86 45.3
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.9e-12 75.9 86 45.3
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 2.1e-10 70.5 138 36.2
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 2.3e-09 67.0 86 43.0


User provided reference genes

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