Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 7.8e-97 357.1 174 100.0
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.0e-39 166.4 88 88.6
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 7.5e-39 164.5 82 93.9
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 9.7e-39 164.1 82 92.7
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.3e-38 163.7 82 91.5
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 2.2e-38 162.9 82 91.5
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 2.8e-38 162.5 82 91.5
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 2.8e-38 162.5 82 91.5
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 2.8e-38 162.5 82 91.5
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 4.8e-38 161.8 82 91.5
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 4.8e-38 161.8 82 90.2
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 6.3e-38 161.4 82 92.7
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 6.3e-38 161.4 82 90.2
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 6.3e-38 161.4 82 92.7
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 8.2e-38 161.0 82 90.2
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 8.2e-38 161.0 83 90.4
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 1.1e-37 160.6 82 91.5
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 1.4e-37 160.2 82 91.5
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.4e-37 160.2 82 89.0
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.4e-37 160.2 82 90.2
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.8e-37 159.8 82 89.0
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 1.8e-37 159.8 82 90.2
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.4e-37 159.5 82 90.2
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.4e-37 159.5 82 90.2
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 3.1e-37 159.1 82 89.0
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 4.1e-37 158.7 82 90.2
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 5.3e-37 158.3 82 89.0
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 5.3e-37 158.3 82 89.0
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 5.3e-37 158.3 82 89.0
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 5.3e-37 158.3 82 89.0
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 5.3e-37 158.3 82 90.2
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 5.3e-37 158.3 80 88.8
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 7.0e-37 157.9 82 89.0
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 7.0e-37 157.9 82 90.2
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 7.0e-37 157.9 82 90.2
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 7.0e-37 157.9 82 89.0
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 7.0e-37 157.9 84 89.3
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 9.1e-37 157.5 82 87.8
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 9.1e-37 157.5 82 87.8
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 9.1e-37 157.5 82 87.8
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 9.1e-37 157.5 82 87.8
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 9.1e-37 157.5 82 87.8
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 9.1e-37 157.5 82 86.6
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.2e-36 157.1 82 89.0
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.2e-36 157.1 82 87.8
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.2e-36 157.1 82 87.8
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.2e-36 157.1 82 87.8
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 1.2e-36 157.1 82 87.8
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 86.6
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 86.6
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 90.2
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 90.2
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 90.2
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 89.0
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 90.2
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.6e-36 156.8 82 90.2
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.0e-36 156.4 82 89.0
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 2.0e-36 156.4 82 89.0
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 2.0e-36 156.4 82 89.0
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.0e-36 156.4 82 85.4
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 2.0e-36 156.4 82 86.6
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 2.7e-36 156.0 82 86.6
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 2.7e-36 156.0 82 87.8
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.7e-36 156.0 82 89.0
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 3.5e-36 155.6 82 89.0
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 3.5e-36 155.6 82 87.8
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 3.5e-36 155.6 82 85.4
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 3.5e-36 155.6 82 87.8
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 3.5e-36 155.6 82 87.8
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.5e-36 155.2 82 87.8
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.5e-36 155.2 82 87.8
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 4.5e-36 155.2 82 86.6
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 4.5e-36 155.2 82 86.6
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 4.5e-36 155.2 82 87.8
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 85.4
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 85.4
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 86.6
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 5.9e-36 154.8 82 87.8
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 7.7e-36 154.5 82 86.6
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 7.7e-36 154.5 82 85.4
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.0e-35 154.1 82 86.6
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.3e-35 153.7 82 86.6
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 1.3e-35 153.7 82 85.4
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.3e-35 153.7 82 89.0
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.3e-35 153.7 94 79.8
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 1.7e-35 153.3 82 86.6
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 2.2e-35 152.9 82 85.4
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 2.2e-35 152.9 82 86.6
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 2.2e-35 152.9 82 86.6
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 2.9e-35 152.5 82 84.1
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.9e-35 152.5 82 82.9
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 3.8e-35 152.1 82 86.6
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 5.0e-35 151.8 82 84.1
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.0e-35 151.8 89 82.0
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.0e-35 151.8 89 82.0
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 6.5e-35 151.4 75 94.7
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 8.5e-35 151.0 82 82.9
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 1.9e-34 149.8 82 84.1
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 2.5e-34 149.4 82 81.7
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 4.7e-33 145.2 82 85.4
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 6.1e-33 144.8 75 89.3
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 8.0e-33 144.4 113 67.3
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 1.2e-31 140.6 85 80.0
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 2.0e-31 139.8 73 90.4
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 3.4e-31 139.0 70 91.4
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.7e-31 138.3 73 86.3
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 1.3e-30 137.1 71 88.7
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 2.2e-30 136.3 82 74.4
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 8.3e-30 134.4 71 87.3
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 8.3e-30 134.4 71 87.3
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 1.1e-29 134.0 72 83.3
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 2.4e-29 132.9 71 84.5
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 3.1e-29 132.5 79 78.5
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 7.0e-29 131.3 71 84.5
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.1e-25 119.8 81 69.1
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 2.8e-25 119.4 82 74.4
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.8e-25 119.4 81 69.1
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 8.0e-25 117.9 82 69.5
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 8.9e-24 114.4 81 66.7
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.6e-23 112.8 115 53.0
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 5.7e-23 111.7 78 69.2
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 1.1e-21 107.5 60 85.0
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.6e-20 103.6 82 62.2
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 1.0e-19 100.9 72 69.4
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.8e-17 92.8 57 80.7
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 2.8e-17 92.8 43 93.0
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 1.4e-13 80.5 81 51.9
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 2.4e-13 79.7 73 54.8
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.2e-07 60.8 72 43.1
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.8e-07 58.5 30 80.0


User provided reference genes

Program Settings