Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 8.2e-147 523.9 295 100.0
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.9e-66 256.9 306 55.6
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 4.5e-60 235.7 297 50.5
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 9.6e-55 218.0 287 50.9
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.8e-53 213.8 257 58.0
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 1.8e-53 213.8 287 54.7
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 4.0e-53 212.6 295 46.8
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 3.4e-52 209.5 294 49.0
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.9e-51 206.5 298 48.0
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.5e-51 205.3 281 49.5
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 2.5e-50 203.4 258 48.8
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.5e-50 203.4 276 47.1
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 2.5e-50 203.4 299 45.8
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 3.2e-50 203.0 281 49.1
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 7.1e-50 201.8 277 45.5
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 7.1e-50 201.8 282 47.5
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 1.2e-49 201.1 292 45.9
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.2e-49 201.1 250 51.6
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.7e-49 199.9 277 48.7
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.3e-48 197.6 295 46.8
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.8e-48 197.2 272 47.8
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 2.3e-48 196.8 248 49.6
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 3.9e-48 196.1 304 45.1
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 3.9e-48 196.1 256 44.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 6.7e-48 195.3 299 45.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.5e-47 194.1 287 45.6
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.9e-47 193.7 294 43.5
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 9.7e-47 191.4 200 64.0
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 2.2e-46 190.3 279 46.6
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.8e-45 187.2 304 45.1
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.9e-43 179.9 279 44.8
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 6.5e-43 178.7 290 41.7
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 8.5e-43 178.3 284 44.7
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.1e-42 177.9 275 44.0
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 4.2e-42 176.0 281 46.3
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 9.4e-42 174.9 180 56.1
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.2e-41 174.5 247 44.1
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.2e-41 174.5 285 40.7
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.1e-41 173.7 289 43.9
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.8e-40 170.6 257 44.0
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.0e-40 169.9 314 40.1
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 3.9e-40 169.5 300 49.3
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 8.8e-40 168.3 273 42.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.8e-38 163.3 252 40.5
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.8e-38 163.3 252 40.5
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 6.3e-38 162.2 250 41.2
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.3e-38 162.2 272 38.2
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 6.3e-38 162.2 297 37.4
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 8.2e-38 161.8 194 48.5
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.1e-37 161.4 292 38.4
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.8e-37 160.6 255 41.2
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.9e-37 158.7 272 38.6
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 6.9e-37 158.7 292 37.7
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 9.1e-37 158.3 264 40.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.4e-36 156.4 293 38.2
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 5.9e-36 155.6 288 37.8
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.0e-35 154.8 311 46.6
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.7e-35 154.1 294 38.4
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.8e-35 152.9 297 39.1
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.0e-35 152.5 192 48.4
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.5e-34 150.2 193 56.5
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 9.4e-34 148.3 301 38.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 9.4e-34 148.3 301 38.2
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 2.7e-33 146.7 205 45.9
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 4.7e-33 146.0 181 47.0
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.0e-32 144.8 189 46.6
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.8e-32 144.1 183 62.8
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.8e-32 144.1 195 46.2
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 3.0e-32 143.3 253 45.5
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 3.9e-32 142.9 192 47.9
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 6.7e-32 142.1 184 44.6
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 8.8e-32 141.7 251 39.0
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 3.3e-31 139.8 254 38.6
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 7.4e-31 138.7 325 33.2
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 9.7e-31 138.3 280 37.5
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 2.2e-30 137.1 248 41.1
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 1.1e-29 134.8 274 42.7
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.1e-29 134.8 269 39.0
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.4e-29 134.4 337 38.6
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.4e-29 134.4 224 47.3
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 7.0e-29 132.1 259 45.2
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.2e-28 131.3 213 42.3
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.2e-28 131.3 213 42.3
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.5e-28 131.0 154 52.6
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.5e-28 131.0 275 36.7
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.0e-28 130.6 224 40.6
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.0e-28 130.6 183 45.4
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 3.5e-28 129.8 261 34.9
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.5e-28 129.4 154 51.9
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.9e-28 129.0 219 42.0
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 1.7e-27 127.5 199 47.7
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 2.2e-27 127.1 208 41.3
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.0e-27 125.9 256 39.5
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 5.0e-27 125.9 260 35.0
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.5e-26 124.4 221 39.8
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 4.2e-26 122.9 274 35.4
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 7.2e-26 122.1 182 46.2
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 1.2e-25 121.3 184 42.4
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.1e-25 120.6 284 34.9
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.6e-25 119.8 183 43.7
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 8.0e-25 118.6 280 36.1
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 8.0e-25 118.6 267 37.1
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 3.0e-24 116.7 177 42.4
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 5.2e-24 115.9 188 41.5
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 2.6e-23 113.6 153 44.4
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 2.6e-23 113.6 300 33.3
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 3.3e-23 113.2 181 43.1
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 2.8e-22 110.2 210 45.2
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.1e-21 106.7 241 35.3
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.1e-21 106.3 240 36.2
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 5.3e-21 105.9 172 41.9
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.6e-20 103.6 309 32.4
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.5e-20 102.8 172 40.1
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 7.7e-20 102.1 113 50.4
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 7.7e-20 102.1 221 39.4
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.2e-19 100.5 201 36.3
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.9e-19 100.1 186 38.2
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 2.9e-19 100.1 194 35.6
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 5.0e-19 99.4 155 51.0
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.5e-19 98.6 228 31.1
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.1e-18 98.2 201 35.3
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.2e-18 95.5 167 37.7
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.6e-17 93.2 194 35.1
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.6e-17 93.2 226 34.1
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 4.7e-17 92.8 194 36.6
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 4.7e-17 92.8 259 28.6
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 8.0e-17 92.0 182 38.5
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.8e-16 90.9 188 37.8
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 2.3e-16 90.5 112 48.2
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 6.8e-16 89.0 178 34.8
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 8.8e-16 88.6 187 41.2
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.2e-15 88.2 206 32.5
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.4e-15 86.7 185 35.7
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 4.4e-15 86.3 222 31.1
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 9.7e-15 85.1 179 42.5
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.3e-14 84.7 188 34.6
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.7e-14 84.3 191 35.6
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 2.2e-14 84.0 187 35.8
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 2.2e-14 84.0 187 35.8
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 3.7e-14 83.2 241 28.2
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 4.8e-14 82.8 135 36.3
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 8.3e-14 82.0 204 31.4
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 1.4e-13 81.3 208 33.2
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 9.1e-13 78.6 137 35.8
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 1.6e-12 77.8 182 31.3
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.7e-12 77.0 199 34.7
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 3.5e-12 76.6 188 33.5
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.7e-11 74.3 191 31.9
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 2.2e-11 73.9 222 36.5
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 2.9e-11 73.6 182 33.5
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 3.8e-11 73.2 68 50.0
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.5e-10 71.2 178 30.9
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 2.5e-10 70.5 188 33.5
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 3.2e-10 70.1 191 31.4
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 4.2e-10 69.7 59 54.2
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 7.2e-10 68.9 59 52.5


User provided reference genes

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