Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 6.2e-67 257.3 128 100.0
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.7e-59 231.5 130 87.7
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.1e-58 229.9 128 88.3
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.4e-58 228.8 129 87.6
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 9.0e-58 226.9 127 85.0
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.2e-57 226.5 128 85.9
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.2e-57 226.5 131 88.5
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.2e-57 226.5 128 86.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.5e-57 226.1 128 84.4
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.8e-57 224.2 128 86.7
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 3.2e-55 218.4 127 83.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 4.2e-55 218.0 132 81.8
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-53 213.4 128 83.6
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.8e-53 212.6 129 82.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.3e-53 212.2 128 82.8
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.3e-53 212.2 128 80.5
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 6.7e-53 210.7 128 82.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 8.7e-53 210.3 128 79.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.1e-52 209.9 128 78.9
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.1e-52 209.9 128 78.9
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.5e-52 209.5 123 82.9
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.9e-52 209.1 128 78.1
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.4e-52 207.2 128 82.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 9.6e-52 206.8 128 82.0
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-51 206.5 131 82.4
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 2.1e-51 205.7 128 80.5
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 4.8e-51 204.5 128 76.6
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.1e-50 203.4 129 77.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.1e-50 203.4 130 79.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.4e-50 203.0 130 79.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.4e-50 203.0 130 79.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.8e-50 202.6 128 81.2
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.4e-50 202.2 128 80.5
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.4e-50 202.2 131 79.4
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.1e-50 201.8 131 79.4
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 4.1e-50 201.4 130 79.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 5.3e-50 201.1 128 78.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 6.9e-50 200.7 130 79.2
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.2e-49 199.9 128 79.7
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.5e-49 199.5 126 79.4
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.5e-49 199.5 128 76.6
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.5e-49 199.5 131 77.9
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.0e-49 199.1 128 75.8
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.4e-49 198.4 128 75.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 3.4e-49 198.4 128 78.1
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 4.5e-49 198.0 128 77.3
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 4.5e-49 198.0 128 76.6
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.8e-49 197.6 126 77.0
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.8e-49 197.6 126 77.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.0e-48 196.8 130 79.2
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.7e-48 196.1 129 77.5
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.9e-48 195.3 130 76.2
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 5.0e-48 194.5 130 76.9
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 8.4e-48 193.7 128 76.6
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 8.4e-48 193.7 131 76.3
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.1e-47 193.4 130 77.7
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 77.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 74.2
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 4.2e-47 191.4 129 77.5
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 9.3e-47 190.3 128 75.0
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-46 189.5 128 72.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.7e-46 188.7 130 74.6
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.7e-46 188.7 130 74.6
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 6.1e-46 187.6 134 73.1
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 7.9e-46 187.2 128 75.0
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 7.9e-46 187.2 128 75.0
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.0e-45 185.3 129 75.2
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.1e-45 184.5 131 73.3
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 5.1e-45 184.5 128 73.4
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.1e-44 183.3 129 72.9
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.1e-44 183.3 132 73.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.5e-44 183.0 118 77.1
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.5e-44 182.2 125 72.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 4.3e-44 181.4 116 75.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 5.7e-44 181.0 130 73.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 7.4e-44 180.6 130 71.5
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 9.7e-44 180.3 132 70.5
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 9.7e-44 180.3 132 69.7
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 9.7e-44 180.3 133 69.2
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 9.7e-44 180.3 133 69.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.7e-44 180.3 128 72.7
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.6e-43 179.5 118 79.7
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.3e-43 177.6 132 72.7
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 6.3e-43 177.6 132 70.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 6.3e-43 177.6 132 70.5
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 8.2e-43 177.2 128 68.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.1e-42 176.8 129 72.9
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.4e-42 175.6 132 71.2
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.1e-42 175.3 134 71.6
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.1e-42 175.3 128 68.8
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.1e-42 174.9 126 70.6
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 5.3e-42 174.5 132 71.2
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 68.8
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 68.8
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 68.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 6.9e-42 174.1 131 71.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 9.0e-42 173.7 133 67.7
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 9.0e-42 173.7 132 67.4
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 9.0e-42 173.7 132 67.4
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 9.0e-42 173.7 132 67.4
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 9.0e-42 173.7 126 70.6
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 69.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 129 72.9
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 7.7e-41 170.6 104 80.8
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.2e-40 169.1 128 68.8
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.9e-40 168.7 130 69.2
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 3.8e-40 168.3 130 70.8
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 3.8e-40 168.3 130 70.0
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.0e-40 167.9 115 73.0
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.4e-39 166.4 131 69.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.9e-39 166.0 129 65.9
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.5e-39 165.6 103 79.6
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 4.2e-39 164.9 96 81.2
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.2e-39 164.9 127 67.7
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.2e-39 164.9 127 67.7
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.4e-39 163.7 130 68.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 9.4e-39 163.7 128 66.4
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 9.4e-39 163.7 114 71.1
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.6e-38 162.9 96 81.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.0e-37 158.7 129 65.9
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 6.7e-37 157.5 110 70.9
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 8.8e-37 157.1 110 71.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 8.8e-37 157.1 130 65.4
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.0e-36 156.0 123 68.3
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.0e-36 156.0 110 70.9
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.3e-36 155.2 128 61.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.2e-35 152.5 110 69.1
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 6.3e-35 151.0 108 63.9
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.1e-34 150.2 94 80.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.4e-34 149.1 113 64.6
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.1e-34 148.7 93 75.3
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 4.5e-33 144.8 127 60.6
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 7.7e-33 144.1 114 64.9
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 5.0e-32 141.4 87 77.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 8.5e-32 140.6 115 63.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.1e-30 134.4 93 74.2
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.4e-29 133.3 128 57.8
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.9e-29 131.7 124 59.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.1e-28 130.2 76 80.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 112 62.5
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 112 62.5
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.2e-27 125.9 122 57.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 9.1e-26 120.6 95 65.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.8e-24 115.2 69 82.6
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.9e-23 112.8 128 56.2
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.2e-22 110.2 104 59.6
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.2e-21 104.8 84 67.9
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.8e-21 104.0 72 70.8
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 7.4e-20 100.9 98 52.0
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.8e-19 98.2 78 65.4
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.3e-16 90.1 67 64.2
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.8e-16 88.6 106 51.9
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.2e-15 84.3 69 65.2
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 4.0e-13 78.6 68 55.9
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.5e-07 60.1 79 44.3


User provided reference genes

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