Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1865.1 986 100.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 0.0e+00 1535.0 951 86.0
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1313.1 992 70.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1296.6 986 70.8
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 0.0e+00 1258.8 992 68.6
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 0.0e+00 1192.9 1010 64.7
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 0.0e+00 1157.9 991 64.7
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 0.0e+00 1141.3 1013 61.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 0.0e+00 1130.2 1018 62.8
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 0.0e+00 1127.5 1116 58.1
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 0.0e+00 1123.2 1022 62.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 0.0e+00 1122.5 1022 61.9
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 0.0e+00 1105.1 1156 56.0
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 0.0e+00 1096.3 716 77.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 0.0e+00 1088.2 998 60.7
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1086.6 1001 61.5
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 0.0e+00 1086.6 991 60.8
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 0.0e+00 1086.2 995 60.6
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 0.0e+00 1082.4 1005 59.8
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 0.0e+00 1078.5 1003 59.9
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 0.0e+00 1077.4 994 60.2
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 0.0e+00 1077.0 992 60.0
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 0.0e+00 1075.1 995 60.4
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1075.1 1002 60.9
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 6.7e-312 1073.9 1046 58.0
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.5e-309 1065.4 994 59.7
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.6e-308 1062.8 996 61.1
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 4.8e-308 1061.2 984 59.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 3.8e-305 1051.6 995 59.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.5e-304 1047.7 1045 56.0
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 7.9e-303 1043.9 1044 55.8
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.8e-302 1042.7 995 59.0
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 5.1e-302 1041.2 992 59.0
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.9e-301 1039.3 1038 55.8
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.6e-300 1036.2 996 57.8
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.7e-300 1035.0 1029 56.1
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 9.0e-299 1030.4 1002 59.1
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 4.5e-298 1028.1 1017 58.2
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.0e-297 1026.9 1000 57.7
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 5.0e-297 1024.6 1107 53.5
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.4e-296 1023.1 1000 58.0
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.0e-294 1016.9 1000 57.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.9e-294 1015.0 999 57.9
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 3.9e-294 1015.0 1008 57.9
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 5.1e-294 1014.6 1001 56.9
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 6.7e-294 1014.2 935 60.6
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.6e-292 1009.6 1046 55.0
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.7e-292 1008.4 999 58.3
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-290 1003.0 1000 58.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 2.9e-289 998.8 1047 56.2
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 1.9e-288 996.1 999 58.5
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 4.2e-288 995.0 995 55.4
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 5.5e-288 994.6 988 55.9
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.8e-286 989.6 994 57.2
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.9e-286 988.4 994 56.5
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.9e-286 988.4 991 57.1
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 3.4e-282 975.3 1026 55.1
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 5.9e-282 974.5 1007 56.7
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 1.3e-281 973.4 1002 54.4
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 8.5e-281 970.7 1018 55.6
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 1.4e-280 969.9 999 54.5
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 2.5e-280 969.1 1004 56.0
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.9e-278 961.8 1001 55.5
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 5.1e-278 961.4 1036 55.7
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.8e-276 955.7 999 54.5
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 6.3e-276 954.5 998 55.4
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 4.5e-274 948.3 1004 55.1
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 8.5e-273 944.1 993 54.9
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.5e-272 942.6 987 55.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 4.0e-270 935.3 936 57.5
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.6e-269 932.6 1005 54.4
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 5.7e-269 931.4 997 55.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 3.5e-266 922.2 1018 53.1
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 1.6e-263 913.3 990 53.3
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 4.0e-262 908.7 997 52.7
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 5.2e-262 908.3 988 52.0
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.6e-261 906.0 1015 53.8
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.6e-261 906.0 1000 51.6
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.8e-260 902.5 1035 52.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 4.5e-258 895.2 996 51.9
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.9e-257 892.5 996 52.9
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 8.5e-257 891.0 1005 52.8
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.5e-256 888.3 993 51.5
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 7.5e-253 877.9 999 51.6
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 3.7e-252 875.5 994 51.6
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.7e-252 875.5 1010 52.1
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.4e-251 872.8 977 54.1
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.1e-247 859.8 1011 52.3
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.4e-245 852.4 677 65.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.0e-242 843.2 1018 50.1
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 3.0e-241 839.3 1002 48.9
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 6.6e-241 838.2 1004 49.5
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 8.6e-241 837.8 991 50.2
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 7.3e-240 834.7 993 51.0
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.8e-239 832.8 723 59.9
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 7.5e-237 824.7 994 49.1
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.4e-235 820.5 669 62.6
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.6e-234 817.0 1000 50.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.5e-234 815.8 997 50.9
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 1.7e-233 813.5 1010 48.6
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 3.0e-233 812.8 670 62.1
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 5.0e-233 812.0 667 62.4
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.1e-232 810.8 992 49.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 2.5e-232 809.7 671 62.1
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 5.6e-232 808.5 722 59.7
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 2.6e-229 799.7 1017 48.4
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 3.4e-229 799.3 684 60.5
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.2e-228 796.6 724 60.1
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 6.6e-225 785.0 697 58.8
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.7e-218 763.1 996 46.1
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 7.3e-216 755.0 772 54.1
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 4.8e-207 725.7 774 51.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 7.6e-205 718.4 716 53.8
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.2e-197 694.5 1009 43.5
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.1e-190 671.4 1044 42.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 7.7e-173 612.1 711 47.0
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 7.7e-165 585.5 1038 39.2
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 1.1e-163 581.6 670 48.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.2e-162 578.2 746 48.0
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.8e-134 484.6 716 42.3
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 8.3e-111 406.0 307 63.5
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.5e-107 395.2 500 40.6
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 8.1e-106 389.4 791 34.0
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.0e-104 384.8 481 42.2
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 5.4e-94 350.1 467 40.9
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.4e-41 175.3 115 72.2
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.5e-40 171.4 115 72.2
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.3e-36 158.7 367 39.5
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.5e-31 140.6 190 46.8
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.1e-30 139.8 372 29.0
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.1e-25 123.2 169 45.6
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.5e-16 91.7 142 42.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 4.5e-16 91.3 142 42.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 7.3e-14 84.0 83 57.8
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.6e-13 82.8 106 43.4
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 6.8e-12 77.4 106 42.5
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 7.0e-09 67.4 69 53.6
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 1.0e-07 63.5 196 30.6


User provided reference genes

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