Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.6e-128 462.2 259 100.0
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 2.0e-88 329.7 217 77.9
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 3.4e-80 302.4 216 70.8
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.2e-78 295.4 211 72.0
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 2.1e-77 293.1 218 67.9
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 3.0e-76 289.3 220 67.3
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 3.9e-76 288.9 163 85.9
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 3.3e-75 285.8 223 66.4
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.3e-75 285.4 163 82.8
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 9.6e-75 284.3 163 79.8
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.1e-74 283.1 163 82.2
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.8e-74 282.7 214 67.3
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 3.7e-74 282.3 158 83.5
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 4.8e-74 282.0 216 68.5
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 6.2e-74 281.6 224 68.8
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 1.1e-73 280.8 222 71.2
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 1.1e-73 280.8 166 82.5
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 1.1e-73 280.8 222 65.8
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.4e-73 280.4 158 81.0
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 1.4e-73 280.4 158 83.5
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.4e-73 279.6 221 64.7
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.4e-73 279.6 210 66.7
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 3.1e-73 279.3 163 84.0
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.1e-73 279.3 165 80.6
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 6.9e-73 278.1 161 82.6
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.9e-73 278.1 161 82.6
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 9.0e-73 277.7 158 82.3
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 9.0e-73 277.7 158 82.9
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.0e-72 276.6 158 80.4
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 4.5e-72 275.4 162 82.1
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 4.5e-72 275.4 162 78.4
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 9.9e-72 274.2 163 80.4
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.9e-72 274.2 165 78.8
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 9.9e-72 274.2 152 84.2
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.9e-71 272.7 161 79.5
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 3.8e-71 272.3 163 78.5
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 3.8e-71 272.3 159 79.2
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 6.4e-71 271.6 163 77.9
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 8.4e-71 271.2 152 83.6
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 8.4e-71 271.2 162 79.6
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.4e-70 270.4 161 78.3
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.4e-70 270.4 159 79.2
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-70 269.6 162 80.2
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.2e-70 269.2 216 66.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 7.1e-70 268.1 158 79.7
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 9.3e-70 267.7 163 77.3
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-69 267.3 162 79.6
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.1e-69 266.5 159 78.6
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 2.1e-69 266.5 152 81.6
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.7e-69 266.2 211 66.4
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.7e-69 266.2 164 77.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 4.6e-69 265.4 162 74.7
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 6.0e-69 265.0 216 65.3
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.0e-69 265.0 216 65.3
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 6.0e-69 265.0 159 78.6
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 1.0e-68 264.2 216 65.3
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.3e-68 263.8 162 74.1
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.8e-68 263.5 159 76.1
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.8e-68 263.5 159 78.6
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-68 263.5 166 77.1
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.3e-68 263.1 164 76.2
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.0e-68 262.7 152 78.9
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.0e-68 262.7 159 77.4
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 3.9e-68 262.3 165 74.5
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 5.1e-68 261.9 157 76.4
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 8.7e-68 261.2 153 78.4
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 8.7e-68 261.2 167 76.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.9e-67 260.0 150 82.0
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-67 260.0 209 64.1
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 3.3e-67 259.2 163 74.2
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 4.3e-67 258.8 161 73.9
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 7.4e-67 258.1 165 74.5
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 7.4e-67 258.1 155 78.1
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 7.4e-67 258.1 165 73.3
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 9.6e-67 257.7 161 73.3
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 9.6e-67 257.7 165 75.2
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 1.6e-66 256.9 161 73.3
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.6e-66 256.9 152 79.6
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 2.1e-66 256.5 159 76.1
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 3.7e-66 255.8 164 75.0
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 4.8e-66 255.4 163 74.2
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 6.2e-66 255.0 223 61.9
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.1e-65 254.2 167 72.5
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.1e-65 254.2 166 72.3
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.4e-65 253.8 223 61.4
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.8e-65 253.4 168 70.2
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 1.8e-65 253.4 163 74.8
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.4e-65 253.1 159 78.6
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 3.1e-65 252.7 170 70.0
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 3.1e-65 252.7 170 70.0
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 3.1e-65 252.7 159 72.3
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 3.1e-65 252.7 166 72.9
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.1e-65 252.7 153 79.7
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 4.0e-65 252.3 164 71.3
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 6.9e-65 251.5 168 69.6
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 6.9e-65 251.5 168 69.6
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-64 250.8 162 75.9
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.5e-64 250.4 161 72.0
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.6e-64 249.6 163 73.0
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 7.6e-64 248.1 148 77.7
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.0e-63 247.7 215 60.9
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 6.5e-63 245.0 162 71.0
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.2e-62 242.7 157 72.6
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.0e-60 236.1 120 93.3
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.5e-59 233.0 162 70.4
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.2e-58 229.9 170 67.1
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 4.8e-58 228.8 217 57.6
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 4.8e-58 228.8 122 88.5
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 2.4e-57 226.5 164 66.5
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.1e-57 225.7 159 69.2
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.5e-56 223.8 163 66.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 2.0e-56 223.4 163 69.3
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 3.4e-56 222.6 121 85.1
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.3e-55 220.7 127 79.5
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 2.5e-54 216.5 161 64.0
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.2e-54 214.9 216 56.9
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 9.4e-54 214.5 147 69.4
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.4e-52 210.7 170 65.3
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.3e-51 205.7 163 60.7
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 3.6e-45 186.0 162 51.2
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 1.8e-44 183.7 158 61.4
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 8.2e-42 174.9 110 76.4
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.6e-40 169.9 162 49.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.7e-40 168.3 150 60.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 3.3e-35 152.9 100 71.0
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 4.8e-34 149.1 91 73.6
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-32 144.1 121 64.5
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.6e-32 144.1 92 70.7
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 1.7e-23 114.0 63 82.5
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.5e-23 112.1 63 77.8
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 9.4e-22 108.2 69 76.8
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 6.8e-20 102.1 68 66.2
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 2.6e-19 100.1 106 54.7
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.8e-18 96.7 125 43.2
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.3e-18 95.5 53 83.0
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.8e-17 94.0 131 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.2e-16 91.3 136 36.0
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 2.0e-16 90.5 54 83.3
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.0e-15 88.2 136 35.3
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.7e-15 87.4 128 36.7
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.3e-15 87.0 133 33.8
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 2.3e-15 87.0 128 36.7
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 3.8e-15 86.3 128 35.2
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.5e-14 83.6 52 71.2
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.6e-13 80.9 128 35.9
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 3.6e-13 79.7 75 50.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.4e-12 77.8 109 38.5
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.8e-10 70.1 129 34.1
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 4.9e-10 69.3 37 86.5
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 6.3e-10 68.9 120 34.2
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 1.4e-09 67.8 61 50.8
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.4e-09 67.0 56 58.9
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 4.1e-09 66.2 117 34.2
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-08 64.3 101 40.6
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 3.5e-08 63.2 104 40.4
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.9e-08 62.4 63 55.6
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 3.9e-07 59.7 90 33.3


User provided reference genes

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