Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.8e-105 386.0 197 100.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 5.4e-54 214.9 220 61.8
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.4e-49 200.3 213 59.2
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.4e-49 199.5 221 57.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.4e-47 191.0 222 54.1
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 4.6e-45 185.3 220 55.0
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 4.3e-43 178.7 225 55.6
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.4e-41 172.9 202 55.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.0e-41 172.2 212 57.1
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 6.9e-41 171.4 217 53.9
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.5e-40 170.2 212 56.6
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.4e-40 169.1 217 53.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.6e-40 167.9 220 51.4
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 3.8e-39 165.6 217 52.5
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 8.4e-39 164.5 202 52.0
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.1e-38 164.1 207 52.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.9e-38 163.3 202 57.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.2e-38 162.5 217 51.6
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 7.1e-38 161.4 208 51.4
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 7.1e-38 161.4 214 49.5
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 7.1e-38 161.4 220 50.9
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.7e-37 159.5 202 49.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.0e-36 157.5 218 49.1
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 3.0e-36 156.0 222 49.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 5.1e-36 155.2 226 49.1
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 5.1e-36 155.2 200 54.5
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 6.7e-36 154.8 220 47.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.9e-35 153.3 217 45.6
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 2.5e-35 152.9 221 52.5
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.5e-35 152.9 220 50.9
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 4.3e-35 152.1 222 48.6
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 2.2e-34 149.8 224 50.0
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 3.7e-34 149.1 226 47.8
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 4.8e-34 148.7 203 54.2
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.3e-34 148.3 198 51.0
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-33 147.5 202 51.5
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.4e-33 146.4 202 52.0
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-32 143.3 220 49.1
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.3e-31 140.6 225 45.8
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-31 140.6 220 47.7
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.3e-31 140.6 220 48.6
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.7e-31 140.2 219 44.7
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.9e-31 139.4 192 49.0
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 5.0e-31 138.7 207 47.8
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.9e-30 136.7 189 49.2
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.9e-30 136.7 204 50.5
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.9e-30 136.7 204 50.5
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-30 136.7 214 46.3
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.5e-30 136.3 218 44.0
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.2e-30 136.0 202 51.0
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.5e-30 135.2 199 50.3
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 7.2e-30 134.8 216 47.2
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-29 134.0 216 47.2
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-29 134.0 199 48.7
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.0e-28 131.0 234 43.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.8e-28 130.2 194 45.4
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.5e-27 127.1 220 43.2
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.0e-27 126.7 204 47.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 4.3e-27 125.6 201 48.3
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.7e-27 125.2 209 45.9
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 7.4e-27 124.8 196 46.9
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 2.2e-26 123.2 248 43.1
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.2e-26 123.2 205 45.4
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.8e-26 122.9 197 43.7
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.8e-26 122.9 207 44.9
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 6.3e-26 121.7 218 44.0
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 6.3e-26 121.7 220 45.9
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 8.2e-26 121.3 200 44.5
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.4e-25 119.8 243 42.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.4e-25 119.8 164 48.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 3.1e-25 119.4 208 46.2
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.2e-24 117.5 152 51.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.2e-24 117.5 223 40.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-24 117.1 142 54.2
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.0e-24 116.7 202 45.0
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.6e-24 116.3 205 45.9
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.5e-24 115.5 151 54.3
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 4.5e-24 115.5 202 46.5
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 4.5e-24 115.5 202 46.5
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 5.9e-24 115.2 208 40.4
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 5.9e-24 115.2 223 39.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.7e-24 114.8 201 46.3
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.7e-23 113.6 132 52.3
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.9e-23 112.8 209 42.1
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.9e-23 112.8 212 43.4
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.8e-23 112.5 197 43.1
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 5.0e-23 112.1 202 42.1
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.0e-23 112.1 205 44.9
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 6.5e-23 111.7 214 42.5
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.1e-22 110.9 226 40.7
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.1e-22 110.9 208 39.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.1e-22 110.9 220 40.0
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 9.4e-22 107.8 229 38.0
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 2.1e-21 106.7 215 41.4
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 4.7e-21 105.5 200 41.5
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 7.9e-21 104.8 214 43.5
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.9e-21 104.8 201 44.3
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.4e-20 104.0 206 42.2
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.8e-20 103.6 204 43.1
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.6e-19 99.8 225 40.4
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.3e-19 99.4 227 41.4
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.4e-19 98.2 227 42.3
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.7e-18 97.1 196 39.8
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.2e-18 96.7 233 37.8
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-18 96.3 197 40.1
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.4e-17 93.2 196 38.3
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 3.1e-17 92.8 193 42.5
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.2e-16 90.9 227 37.9
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.5e-16 90.5 207 38.2
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.6e-16 89.7 218 36.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.9e-14 83.6 147 44.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.2e-14 82.8 200 39.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 4.2e-14 82.4 202 41.6
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 7.2e-14 81.6 193 36.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 9.4e-14 81.3 197 34.5
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 6.1e-13 78.6 203 37.9
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 6.1e-13 78.6 203 37.9
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 6.1e-13 78.6 203 37.9
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 8.0e-13 78.2 175 37.7
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.0e-12 77.8 199 38.7
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.0e-12 77.8 199 38.7
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.4e-12 77.4 149 45.6
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.4e-12 77.4 123 44.7
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 2.3e-12 76.6 196 36.2
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 2.3e-12 76.6 196 36.2
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 2.3e-12 76.6 243 33.3
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.3e-12 76.6 223 35.0
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 3.0e-12 76.3 223 34.1
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 3.0e-12 76.3 222 33.3
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 3.9e-12 75.9 211 38.4
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 3.9e-12 75.9 208 37.5
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 5.2e-12 75.5 199 38.2
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-11 74.3 222 33.3
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-11 73.9 199 37.2
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-11 73.9 196 36.2
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-11 73.9 199 37.2
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.5e-11 73.9 199 38.2
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.6e-11 73.2 121 47.1
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 2.6e-11 73.2 199 37.2
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.6e-11 73.2 165 37.0
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.3e-11 72.8 208 37.0
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 3.3e-11 72.8 186 38.7
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 4.4e-11 72.4 199 36.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 4.4e-11 72.4 199 36.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 5.7e-11 72.0 197 37.6
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 7.4e-11 71.6 199 35.2
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 7.4e-11 71.6 149 40.3
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.3e-10 70.9 201 35.3
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.7e-10 70.5 241 32.4
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.7e-10 70.5 59 64.4
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.8e-10 69.7 132 43.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.7e-10 69.3 199 36.2
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 4.8e-10 68.9 116 44.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 4.8e-10 68.9 234 32.5
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.8e-10 68.9 213 33.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 8.2e-10 68.2 51 64.7
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.4e-09 67.4 227 34.8
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 5.3e-09 65.5 200 35.0
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.3e-09 65.5 215 31.2
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 7.0e-09 65.1 45 75.6
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.1e-09 64.7 248 31.9
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.2e-08 64.3 188 31.4
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 2.0e-08 63.5 190 31.6
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 2.6e-08 63.2 189 32.3
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.5e-08 62.8 54 55.6
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.0e-07 61.2 54 53.7
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.3e-07 60.8 101 45.5
Glyma.13G098200 Glycine max HOM05D007665 ORTHO05D008293 1.7e-07 60.5 226 29.2
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 5.0e-07 58.9 216 32.9
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 1.1e-06 57.8 220 29.5
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.1e-06 57.8 45 60.0
QL11p005089 Quercus lobata HOM05D007665 ORTHO05D008293 1.5e-06 57.4 241 25.7
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.9e-06 57.0 149 40.3
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 4.2e-06 55.8 36 69.4
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.2e-06 55.8 36 69.4
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 5.5e-06 55.5 44 59.1
Gohir.D08G093300 Gossypium hirsutum HOM05D007665 ORTHO05D008293 5.5e-06 55.5 240 26.7
TAR625G0485 Trochodendron aralioides HOM05D007665 ORTHO05D008293 7.2e-06 55.1 266 27.4


User provided reference genes

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