Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 3.3e-231 804.7 404 100.0
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 2.6e-151 539.3 434 66.8
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 2.1e-145 519.6 437 60.2
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 8.9e-144 514.2 427 61.4
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 4.9e-142 508.4 428 60.3
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.4e-141 506.9 425 58.8
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.1e-140 503.1 453 61.1
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.6e-140 501.9 425 58.4
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 6.0e-140 501.5 425 58.6
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.0e-139 500.7 431 60.8
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 3.0e-139 499.2 431 58.9
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 5.1e-139 498.4 447 56.6
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.1e-138 497.3 455 57.8
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.5e-138 496.9 426 59.6
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 2.5e-138 496.1 435 61.4
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 2.1e-137 493.0 426 60.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.1e-137 493.0 423 59.3
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.8e-136 488.0 423 59.3
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 2.2e-134 483.0 433 58.4
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 3.8e-134 482.3 431 58.5
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.4e-133 480.3 442 57.2
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.9e-133 479.9 427 58.1
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 1.2e-132 477.2 468 56.6
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 4.6e-132 475.3 437 57.2
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.9e-131 472.2 428 55.8
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.1e-131 471.9 428 55.8
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.1e-131 471.9 428 56.1
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 5.1e-131 471.9 436 57.3
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 8.6e-131 471.1 428 56.3
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 1.5e-130 470.3 435 57.5
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.5e-130 470.3 417 57.8
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 3.3e-130 469.2 442 55.7
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 5.6e-130 468.4 471 53.5
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 1.4e-128 463.8 433 56.4
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.8e-128 463.4 447 53.9
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 3.1e-128 462.6 430 56.5
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 3.1e-128 462.6 440 55.0
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.3e-126 457.2 431 55.7
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 1.3e-126 457.2 457 55.1
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 3.8e-126 455.7 383 61.9
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 8.4e-126 454.5 430 55.6
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.9e-125 453.4 432 55.6
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 2.4e-125 453.0 437 57.9
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 2.4e-125 453.0 427 54.1
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 2.4e-125 453.0 428 54.9
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.6e-124 450.3 381 62.2
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 2.1e-124 449.9 441 53.5
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 3.5e-124 449.1 453 52.5
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 4.6e-124 448.7 463 54.0
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 6.6e-123 444.9 432 53.2
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 8.1e-121 438.0 437 52.4
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.4e-120 436.4 432 52.8
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 2.4e-120 436.4 430 54.2
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 5.3e-120 435.3 434 54.4
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 2.0e-119 433.3 431 52.7
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 4.5e-119 432.2 453 54.1
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 4.5e-119 432.2 419 53.2
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 4.5e-119 432.2 450 53.8
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 3.2e-117 426.0 459 51.4
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 3.2e-117 426.0 379 56.7
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 7.1e-117 424.9 459 51.4
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 7.1e-117 424.9 459 51.4
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 6.0e-116 421.8 459 51.4
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 7.9e-116 421.4 380 58.2
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.0e-115 421.0 459 51.4
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.3e-115 420.6 436 51.6
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.8e-115 420.2 459 51.2
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.8e-115 420.2 416 53.8
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.5e-114 417.2 435 52.6
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.5e-114 416.4 382 57.3
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 3.3e-114 416.0 418 52.9
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 6.2e-113 411.8 435 52.2
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 8.1e-113 411.4 374 57.5
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.1e-112 411.0 432 51.4
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.1e-112 411.0 385 54.8
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 4.0e-112 409.1 444 51.8
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 4.5e-111 405.6 436 50.0
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 9.9e-111 404.4 376 55.1
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.9e-110 402.9 377 54.4
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 6.7e-107 391.7 437 49.7
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 6.2e-105 385.2 378 52.9
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 8.2e-105 384.8 437 47.8
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.4e-104 383.3 415 47.0
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 2.6e-103 379.8 379 53.6
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 7.6e-103 378.3 492 44.7
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 2.2e-102 376.7 402 52.7
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 6.5e-102 375.2 386 51.0
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 2.7e-100 369.8 379 51.5
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 8.7e-99 364.8 377 50.4
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 3.3e-98 362.8 439 47.6
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.2e-95 354.4 502 40.8
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 2.2e-94 350.1 427 47.3
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 1.4e-93 347.4 400 47.5
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 2.5e-93 346.7 442 44.3
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 4.2e-93 345.9 434 45.2
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 4.6e-92 342.4 349 50.1
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.4e-91 340.9 440 45.0
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 5.1e-91 339.0 444 44.6
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 2.5e-90 336.7 278 58.3
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 4.3e-90 335.9 430 44.0
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 1.1e-88 331.3 436 45.0
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 5.3e-88 328.9 436 44.0
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 6.9e-88 328.6 436 44.5
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.9e-85 320.5 449 43.4
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 4.4e-82 309.3 383 45.4
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 3.7e-81 306.2 413 43.3
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.4e-80 304.3 415 40.0
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 5.9e-79 298.9 265 56.2
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 2.9e-78 296.6 431 41.5
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 5.0e-78 295.8 431 41.5
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 4.2e-77 292.7 417 41.2
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.1e-76 290.4 451 37.5
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 3.6e-76 289.7 444 41.7
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 4.4e-74 282.7 322 51.2
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.7e-74 282.3 451 37.0
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.8e-73 280.0 393 42.2
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.8e-73 279.3 431 38.3
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.1e-72 278.1 420 41.7
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.1e-72 275.0 455 40.7
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.0e-70 271.6 292 50.3
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 2.0e-63 247.3 283 45.9
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.7e-60 236.9 275 47.3
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.5e-55 219.5 299 39.1
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 2.3e-43 180.6 391 30.7
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 4.1e-32 143.3 129 53.5
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 1.4e-16 91.7 52 88.5
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 4.2e-16 90.1 76 68.4
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 5.4e-16 89.7 56 80.4
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 7.1e-16 89.4 74 66.2
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.3e-14 85.1 87 50.6
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 2.3e-14 84.3 163 36.8
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 2.1e-12 77.8 52 82.7
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 6.2e-12 76.3 54 72.2
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 3.8e-09 67.0 43 74.4
Solyc07g045560.1 Solanum lycopersicum HOM05D005756 ORTHO05D018916 2.1e-07 61.2 39 74.4


User provided reference genes

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