Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 3.5e-69 265.0 149 100.0
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 1.2e-21 107.1 146 45.9
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 2.1e-21 106.3 147 46.9
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 3.9e-20 102.1 145 47.6
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 6.6e-20 101.3 143 46.9
Nitab4.5_0003924g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.3e-19 99.0 129 50.4
ECA236G4404 Erigeron canadensis HOM05D009374 ORTHO05D012864 9.6e-19 97.4 148 48.0
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 2.8e-18 95.9 149 44.3
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 3.6e-18 95.5 150 44.7
MELO3C025418.2 Cucumis melo HOM05D006536 ORTHO05D005877 4.8e-18 95.1 139 43.9
ClCG10G005680 Citrullus lanatus HOM05D006536 ORTHO05D005877 1.4e-17 93.6 139 41.0
PSO541G3913 Papaver somniferum HOM05D006536 ORTHO05D005877 1.4e-17 93.6 144 46.5
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 2.4e-17 92.8 143 41.3
PSO478G5239 Papaver somniferum HOM05D006536 ORTHO05D005877 4.0e-17 92.0 140 47.1
PSO541G5532 Papaver somniferum HOM05D006536 ORTHO05D005877 6.9e-17 91.3 145 46.2
PSO675G9181 Papaver somniferum HOM05D006536 ORTHO05D005877 6.9e-17 91.3 141 45.4
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 9.0e-17 90.9 141 41.1
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 2.6e-16 89.4 141 44.7
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 3.4e-16 89.0 153 43.8
Lsat_1_v5_gn_7_106501 Lactuca sativa HOM05D009374 ORTHO05D012864 3.4e-16 89.0 148 41.2
Hma1.2p1_0745F.1_g212040 Hydrangea macrophylla HOM05D006536 ORTHO05D005877 4.5e-16 88.6 144 41.7
Nitab4.5_0005213g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.5e-16 88.6 139 43.9
PSO541G4685 Papaver somniferum HOM05D006536 ORTHO05D005877 4.5e-16 88.6 141 44.7
Peaxi162Scf00714g00424 Petunia axillaris HOM05D006536 ORTHO05D005877 7.6e-16 87.8 136 41.9
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 9.9e-16 87.4 148 43.2
HanXRQChr11g0332931 Helianthus annuus HOM05D009374 ORTHO05D012864 2.2e-15 86.3 150 44.0
Peaxi162Scf00714g00432 Petunia axillaris HOM05D006536 ORTHO05D005877 2.2e-15 86.3 99 49.5
SHI31832 Sapria himalayana HOM05D006536 ORTHO05D005877 4.9e-15 85.1 133 41.4
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 6.4e-15 84.7 142 40.8
Migut.H00699 Erythranthe guttata HOM05D006536 ORTHO05D005877 8.4e-15 84.3 142 42.3
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 8.4e-15 84.3 142 39.4
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 8.4e-15 84.3 139 36.7
MBI18_g21250_MAGBIO Magnolia biondii HOM05D006536 ORTHO05D005877 4.2e-14 82.0 98 46.9
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 4.2e-14 82.0 129 41.9
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 7.1e-14 81.3 142 38.0
HanXRQChr11g0337791 Helianthus annuus HOM05D009374 ORTHO05D012864 9.3e-14 80.9 153 41.2
Eucgr.F00977 Eucalyptus grandis HOM05D006536 ORTHO05D005877 1.6e-13 80.1 142 41.5
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 2.1e-13 79.7 142 41.5
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 2.1e-13 79.7 148 38.5
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 2.1e-13 79.7 116 43.1
CAN.G981.17 Capsicum annuum HOM05D006536 ORTHO05D005877 2.7e-13 79.3 143 42.7
PSO541G2788 Papaver somniferum HOM05D006536 ORTHO05D005877 3.5e-13 79.0 137 43.8
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 6.0e-13 78.2 142 35.2
Nitab4.5_0006023g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 7.9e-13 77.8 141 36.2
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 7.9e-13 77.8 135 37.0
CAN.G981.16 Capsicum annuum HOM05D006536 ORTHO05D005877 1.0e-12 77.4 146 42.5
Eucgr.F00976 Eucalyptus grandis HOM05D006536 ORTHO05D005877 1.0e-12 77.4 142 38.0
CAN.G981.18 Capsicum annuum HOM05D006536 ORTHO05D005877 1.3e-12 77.0 135 40.0
Dinv40717 Davidia involucrata HOM05D006536 ORTHO05D005877 1.3e-12 77.0 113 48.7
ECA236G0204 Erigeron canadensis HOM05D009374 ORTHO05D012864 1.3e-12 77.0 159 39.6
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 2.3e-12 76.3 141 34.8
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 2.3e-12 76.3 144 41.0
Nn1g07021 Nelumbo nucifera HOM05D023228 ORTHO05D005877 3.0e-12 75.9 136 39.0
SHI26644 Sapria himalayana HOM05D006536 ORTHO05D005877 3.0e-12 75.9 142 33.8
COL.COLO4_09580 Corchorus olitorius HOM05D015826 ORTHO05D005877 3.9e-12 75.5 139 34.5
SHI26633 Sapria himalayana HOM05D006536 ORTHO05D005877 6.7e-12 74.7 138 38.4
SHI26638 Sapria himalayana HOM05D006536 ORTHO05D005877 6.7e-12 74.7 132 37.9
HanXRQChr13g0408641 Helianthus annuus HOM05D009374 ORTHO05D005877 8.7e-12 74.3 148 36.5
Nitab4.5_0001479g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.1e-11 73.9 142 38.0
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 1.5e-11 73.6 141 38.3
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 1.9e-11 73.2 145 35.9
Lsat_1_v5_gn_5_5901 Lactuca sativa HOM05D009374 ORTHO05D005877 2.5e-11 72.8 161 32.9
Nn1g07020 Nelumbo nucifera HOM05D023228 ORTHO05D005877 2.5e-11 72.8 144 38.9
Manes.15G075900 Manihot esculenta HOM05D007475 ORTHO05D005877 3.3e-11 72.4 146 34.2
Sopen08g028800 Solanum pennellii HOM05D006536 ORTHO05D005877 4.3e-11 72.0 108 41.7
ECA236G3076 Erigeron canadensis HOM05D009374 ORTHO05D012864 5.6e-11 71.6 127 44.9
unitig_744.g24698 Utricularia gibba HOM05D009374 ORTHO05D005877 5.6e-11 71.6 130 36.2
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 9.6e-11 70.9 126 41.3
SalBow3G0084 Salvia bowleyana HOM05D003262 ORTHO05D003608 1.3e-10 70.5 154 38.3
SGA_v2.0_scaffold20G09060 Striga asiatica HOM05D006536 ORTHO05D005877 1.3e-10 70.5 137 36.5
Migut.J01035 Erythranthe guttata HOM05D006536 ORTHO05D005877 1.6e-10 70.1 147 36.7
Nitab4.5_0004487g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.6e-10 70.1 106 41.5
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 2.1e-10 69.7 150 40.0
CDE05G1907 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 2.8e-10 69.3 147 33.3
Nitab4.5_0001479g0060 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.8e-10 69.3 142 36.6
Potri.011G134400 Populus trichocarpa HOM05D006536 ORTHO05D005877 3.7e-10 68.9 138 35.5
Potri.011G134500 Populus trichocarpa HOM05D006536 ORTHO05D005877 3.7e-10 68.9 138 35.5
Solyc07g064210.2 Solanum lycopersicum HOM05D006536 ORTHO05D005877 4.8e-10 68.6 142 35.9
ECA236G3141 Erigeron canadensis HOM05D009374 ORTHO05D012864 6.2e-10 68.2 167 38.3
Lsat_1_v5_gn_7_93341 Lactuca sativa HOM05D009374 ORTHO05D012864 6.2e-10 68.2 147 37.4
Lsat_1_v5_gn_7_93361 Lactuca sativa HOM05D009374 ORTHO05D012864 6.2e-10 68.2 147 37.4
Lsat_1_v5_gn_7_93381 Lactuca sativa HOM05D009374 ORTHO05D012864 6.2e-10 68.2 147 37.4
Lsat_1_v5_gn_7_93441 Lactuca sativa HOM05D009374 ORTHO05D012864 6.2e-10 68.2 147 37.4
Lsat_1_v5_gn_7_93500 Lactuca sativa HOM05D009374 ORTHO05D012864 6.2e-10 68.2 147 37.4
Lsat_1_v5_gn_7_93520 Lactuca sativa HOM05D009374 ORTHO05D012864 6.2e-10 68.2 147 37.4
Nitab4.5_0008018g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 6.2e-10 68.2 112 38.4
Nitab4.5_0000397g0180 Nicotiana tabacum HOM05D006536 ORTHO05D005877 8.1e-10 67.8 109 44.0
CDE11G0553 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.1e-09 67.4 147 33.3
Sabra11G0120700 Salix brachista HOM05D006536 ORTHO05D005877 1.1e-09 67.4 134 35.8
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 1.8e-09 66.6 142 38.0
Nn1g07017 Nelumbo nucifera HOM05D023228 ORTHO05D005877 1.8e-09 66.6 144 36.8
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 2.4e-09 66.2 138 39.1
Solyc08g080490.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 2.4e-09 66.2 140 33.6
Migut.J01038 Erythranthe guttata HOM05D006536 ORTHO05D005877 3.1e-09 65.9 149 35.6
Nitab4.5_0001479g0070 Nicotiana tabacum HOM05D006536 ORTHO05D005877 3.1e-09 65.9 129 38.8
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 4.0e-09 65.5 143 32.2
TWI39G0888 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 4.0e-09 65.5 141 31.9
Manes.03G123318 Manihot esculenta HOM05D006536 ORTHO05D005877 6.9e-09 64.7 131 33.6
CsaV3_3G005360 Cucumis sativus L. HOM05D006536 ORTHO05D005877 9.0e-09 64.3 94 39.4
Migut.J01041 Erythranthe guttata HOM05D006536 ORTHO05D005877 9.0e-09 64.3 148 35.8
Sabra02G0106400 Salix brachista HOM05D006536 ORTHO05D005877 9.0e-09 64.3 108 39.8
Sopen07g032360 Solanum pennellii HOM05D006536 ORTHO05D005877 9.0e-09 64.3 143 32.9
CANSAT54G1080 Cannabis sativa HOM05D006536 ORTHO05D005877 1.2e-08 63.9 134 33.6
COL.COLO4_27651 Corchorus olitorius HOM05D020248 ORTHO05D022235 1.2e-08 63.9 143 37.1
HanXRQChr15g0493431 Helianthus annuus HOM05D009374 ORTHO05D012864 2.0e-08 63.2 146 32.9
PSO017G6165 Papaver somniferum HOM05D006536 ORTHO05D005877 2.0e-08 63.2 139 40.3
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 2.6e-08 62.8 153 39.2
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.6e-08 62.8 154 31.8
Gohir.D01G062500 Gossypium hirsutum HOM05D015826 ORTHO05D005877 4.5e-08 62.0 141 36.2
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 4.5e-08 62.0 151 32.5
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 5.8e-08 61.6 152 39.5
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 5.8e-08 61.6 160 39.4
Gohir.A01G075200 Gossypium hirsutum HOM05D015826 ORTHO05D005877 5.8e-08 61.6 143 36.4
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 7.6e-08 61.2 104 32.7
DCAR_022529 Daucus carota HOM05D006536 ORTHO05D005877 7.6e-08 61.2 107 35.5
Gorai.002G083200 Gossypium raimondii HOM05D015826 ORTHO05D005877 7.6e-08 61.2 141 36.2
Cpa.g.sc10.239 Carica papaya HOM05D007475 ORTHO05D009529 9.9e-08 60.8 159 39.6
ClCG10G005660 Citrullus lanatus HOM05D006536 ORTHO05D005877 9.9e-08 60.8 150 34.7
MELO3C032238.2 Cucumis melo HOM05D006536 ORTHO05D005877 9.9e-08 60.8 94 37.2
QL08p012979 Quercus lobata HOM05D006536 ORTHO05D005877 9.9e-08 60.8 141 36.2
QL08p013125 Quercus lobata HOM05D009374 ORTHO05D005877 9.9e-08 60.8 146 31.5
SHI27896 Sapria himalayana HOM05D006536 ORTHO05D005877 1.3e-07 60.5 107 38.3
unitig_8.g4307 Utricularia gibba HOM05D006536 ORTHO05D005877 1.3e-07 60.5 151 32.5
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.7e-07 60.1 151 32.5
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.7e-07 60.1 151 32.5
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.7e-07 60.1 151 32.5
ClCG09G018590 Citrullus lanatus HOM05D006536 ORTHO05D005877 2.2e-07 59.7 107 36.4
PSO782G1199 Papaver somniferum HOM05D006536 ORTHO05D005877 2.2e-07 59.7 64 45.3
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 4.9e-07 58.5 151 31.1
Gorai.009G426600 Gossypium raimondii HOM05D015826 ORTHO05D005877 1.1e-06 57.4 145 34.5
SHI26699 Sapria himalayana HOM05D006536 ORTHO05D005877 1.4e-06 57.0 107 37.4
CDE11G0063 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.9e-06 56.6 139 31.7
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.4e-06 56.2 151 27.8
THA.LOC104817655 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.4e-06 56.2 151 29.8
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.2e-06 55.8 155 29.7
GSVIVG01001973001 Vitis vinifera HOM05D006536 ORTHO05D005877 3.2e-06 55.8 107 35.5
Gohir.A12G155350 Gossypium hirsutum HOM05D020248 ORTHO05D022235 4.2e-06 55.5 93 36.6
Manes.03G123501 Manihot esculenta HOM05D006536 ORTHO05D005877 5.5e-06 55.1 149 34.2
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 7.1e-06 54.7 144 36.8
ECA248G3520 Erigeron canadensis HOM05D009374 ORTHO05D012864 7.1e-06 54.7 150 32.0
AT4G27160 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 9.3e-06 54.3 150 35.3


User provided reference genes

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