Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26492 Davidia involucrata HOM05D000513 ORTHO05D003825 1.5e-58 229.2 109 100.0
Rhsim01G0106500 Rhododendron simsii HOM05D000513 ORTHO05D003825 3.8e-25 118.2 67 85.1
vmacro20744 Vaccinium macrocarpon HOM05D000513 ORTHO05D003825 1.5e-24 116.3 62 85.5
Atru.chr7.995 Acer truncatum HOM05D000513 ORTHO05D003825 9.5e-24 113.6 62 83.9
QL11p007112 Quercus lobata HOM05D000513 ORTHO05D003825 2.1e-23 112.5 65 78.5
Actinidia02548 Actinidia chinensis HOM05D000513 ORTHO05D003825 3.6e-23 111.7 62 80.6
Nitab4.5_0000170g0160 Nicotiana tabacum HOM05D000513 ORTHO05D003825 3.6e-23 111.7 62 80.6
Peaxi162Scf00474g00313 Petunia axillaris HOM05D000513 ORTHO05D003825 1.0e-22 110.2 62 79.0
Cfa012887 Carpinus fangiana HOM05D000513 ORTHO05D003825 1.4e-22 109.8 64 73.4
Hma1.2p1_0411F.1_g147060 Hydrangea macrophylla HOM05D000513 ORTHO05D003825 1.4e-22 109.8 62 79.0
Sabra18G0126300 Salix brachista HOM05D000513 ORTHO05D003825 1.4e-22 109.8 62 79.0
Solyc07g042830.4 Solanum lycopersicum HOM05D000513 ORTHO05D003825 1.4e-22 109.8 62 79.0
Sopen07g022460 Solanum pennellii HOM05D000513 ORTHO05D003825 1.4e-22 109.8 62 79.0
Potri.018G149500 Populus trichocarpa HOM05D000513 ORTHO05D003825 2.3e-22 109.0 62 79.0
TAR383G0183 Trochodendron aralioides HOM05D000513 ORTHO05D003825 3.0e-22 108.6 62 80.6
MSTRG.19407 Avicennia marina HOM05D000513 ORTHO05D003825 8.9e-22 107.1 62 79.0
CiPaw.08G000700 Carya illinoinensis HOM05D000513 ORTHO05D003825 8.9e-22 107.1 60 76.7
Migut.J00854 Erythranthe guttata HOM05D000513 ORTHO05D003825 8.9e-22 107.1 62 75.8
PGR044G0413 Punica granatum HOM05D000513 ORTHO05D003825 8.9e-22 107.1 62 80.6
Lsat_1_v5_gn_5_81081 Lactuca sativa HOM05D000513 ORTHO05D003825 1.2e-21 106.7 62 79.0
PGSC0003DMG401013540 Solanum tuberosum HOM05D000513 ORTHO05D003825 1.2e-21 106.7 60 80.0
Nn8g41230 Nelumbo nucifera HOM05D000513 ORTHO05D003825 2.6e-21 105.5 62 74.2
SalBow6G1032 Salvia bowleyana HOM05D000513 ORTHO05D003825 4.4e-21 104.8 62 75.8
DCAR_020450 Daucus carota HOM05D000513 ORTHO05D003825 5.7e-21 104.4 62 77.4
Prupe.6G144700 Prunus persica HOM05D000513 ORTHO05D003825 5.7e-21 104.4 62 74.2
MBI16_g00829_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D003825 9.8e-21 103.6 65 70.8
Lju50C25T2 Lonicera japonica HOM05D000513 ORTHO05D003825 1.3e-20 103.2 62 74.2
Oeu000959.1 Olea europaea HOM05D000513 ORTHO05D003825 1.3e-20 103.2 62 79.0
Cc06_g23740 Coffea canephora HOM05D000513 ORTHO05D003825 2.8e-20 102.1 62 72.6
MD13G1285500 Malus domestica HOM05D000513 ORTHO05D003825 4.9e-20 101.3 62 74.2
Eucgr.C02159 Eucalyptus grandis HOM05D000513 ORTHO05D003825 6.3e-20 100.9 62 74.2
HanXRQChr10g0309461 Helianthus annuus HOM05D000513 ORTHO05D003825 8.3e-20 100.5 62 75.8
FvH4_4g00200 Fragaria vesca HOM05D000513 ORTHO05D003825 2.4e-19 99.0 61 73.8
FAN12G3115 Fragaria x ananassa HOM05D000513 ORTHO05D003825 2.4e-19 99.0 61 73.8
Hund03216 Selenicereus undatus HOM05D000513 ORTHO05D003825 2.4e-19 99.0 62 69.4
RcHm_v2.0_Chr4g0384801 Rosa chinensis HOM05D000513 ORTHO05D003825 3.1e-19 98.6 61 72.1
EL10Ac2g03611 Beta vulgaris HOM05D000513 ORTHO05D003825 7.0e-19 97.4 63 65.1
FAN17G2564 Fragaria x ananassa HOM05D000513 ORTHO05D003825 1.6e-18 96.3 61 72.1
FAN22G1643 Fragaria x ananassa HOM05D000513 ORTHO05D003825 1.6e-18 96.3 61 72.1
AUR62020744 Chenopodium quinoa HOM05D000513 ORTHO05D003825 2.0e-18 95.9 63 63.5
Ah.11g043540 Amaranthus hybridus HOM05D000513 ORTHO05D003825 1.7e-17 92.8 62 61.3
GSVIVG01032233001 Vitis vinifera HOM05D000513 ORTHO05D003825 1.7e-17 92.8 61 72.1
AUR62027969 Chenopodium quinoa HOM05D000513 ORTHO05D003825 2.9e-17 92.0 63 61.9
unitig_26.g9124 Utricularia gibba HOM05D000513 ORTHO05D003825 5.0e-17 91.3 59 66.1
CDE06G1650 Ceratophyllum demersum HOM05D000513 ORTHO05D003825 6.6e-17 90.9 61 63.9
SMO364G0449 Selaginella moellendorffii HOM05D000513 ORTHO05D003825 6.1e-15 84.3 61 62.3
AagrBONN_evm.TU.Sc2ySwM_344.145 Anthoceros agrestis HOM05D000513 ORTHO05D003825 2.3e-14 82.4 61 55.7
CSS0028922 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D003825 2.6e-13 79.0 58 65.5
CANSAT80G1561 Cannabis sativa HOM05D000513 ORTHO05D003825 4.9e-12 74.7 61 55.7
Mapoly0065s0020 Marchantia polymorpha HOM05D000513 ORTHO05D003825 4.1e-11 71.6 60 46.7
Pp3c7_22420 Physcomitrium patens HOM05D000513 ORTHO05D003825 7.0e-11 70.9 65 46.2
Pp3c1_8710 Physcomitrium patens HOM05D000513 ORTHO05D003825 1.6e-10 69.7 59 45.8
Haze_21252 Corylus avellana HOM05D000513 ORTHO05D003825 2.7e-10 68.9 67 53.7
CsaV3_6G051510 Cucumis sativus L. HOM05D000513 ORTHO05D003825 4.6e-10 68.2 77 45.5
Manes.15G118600 Manihot esculenta HOM05D000513 ORTHO05D003825 6.0e-10 67.8 70 45.7
MELO3C007155.2 Cucumis melo HOM05D000513 ORTHO05D003825 1.0e-09 67.0 70 45.7
Pp3c2_29290 Physcomitrium patens HOM05D000513 ORTHO05D003825 1.0e-09 67.0 65 46.2
CSS0036876 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D003825 3.9e-09 65.1 58 56.9
Cpa.g.sc17.97 Carica papaya HOM05D000513 ORTHO05D003825 5.0e-09 64.7 70 48.6
ClCG01G024360 Citrullus lanatus HOM05D000513 ORTHO05D003825 5.0e-09 64.7 70 44.3
Cre16.g665800 Chlamydomonas reinhardtii HOM05D000513 ORTHO05D003825 6.6e-09 64.3 59 47.5
MCO09G471 Micromonas commoda HOM05D000513 ORTHO05D003825 6.6e-09 64.3 59 45.8
CARHR224990 Cardamine hirsuta HOM05D000513 ORTHO05D003825 8.6e-09 63.9 74 43.2
Sed0016815 Sechium edule HOM05D000513 ORTHO05D003825 8.6e-09 63.9 70 44.3
Ciclev10014107m.g Citrus clementina HOM05D000513 ORTHO05D003825 1.1e-08 63.5 70 44.3
SEGI_05664 Sequoiadendron giganteum HOM05D000513 ORTHO05D003825 1.1e-08 63.5 74 40.5
ATR0135G002 Amborella trichopoda HOM05D000513 ORTHO05D003825 1.5e-08 63.2 58 46.6
Sed0004653 Sechium edule HOM05D000513 ORTHO05D003825 1.5e-08 63.2 72 41.7
Os01g0720600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D003825 1.9e-08 62.8 71 40.8
Atru.chr10.1352 Acer truncatum HOM05D000513 ORTHO05D003825 2.5e-08 62.4 74 41.9
RcHm_v2.0_Chr5g0013241 Rosa chinensis HOM05D000513 ORTHO05D003825 2.5e-08 62.4 63 47.6
FvH4_3g06130 Fragaria vesca HOM05D000513 ORTHO05D003825 3.3e-08 62.0 63 47.6
FAN11G0900 Fragaria x ananassa HOM05D000513 ORTHO05D003825 3.3e-08 62.0 63 47.6
FAN21G1465 Fragaria x ananassa HOM05D000513 ORTHO05D003825 3.3e-08 62.0 63 47.6
vmacro03968 Vaccinium macrocarpon HOM05D000513 ORTHO05D003825 3.3e-08 62.0 70 42.9
EL10Ac8g19763 Beta vulgaris HOM05D000513 ORTHO05D003825 4.3e-08 61.6 66 45.5
Eucgr.D00323 Eucalyptus grandis HOM05D000513 ORTHO05D003825 4.3e-08 61.6 66 43.9
FAN16G3189 Fragaria x ananassa HOM05D000513 ORTHO05D003825 4.3e-08 61.6 63 47.6
Os05g0533600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D003825 4.3e-08 61.6 69 40.6
PGR031G3590 Punica granatum HOM05D000513 ORTHO05D003825 4.3e-08 61.6 66 43.9
Zm00001eb353810 Zea mays HOM05D000513 ORTHO05D003825 4.3e-08 61.6 67 40.3
Carub.0007s2309 Capsella rubella HOM05D000513 ORTHO05D003825 5.6e-08 61.2 69 40.6
Mapoly0033s0170 Marchantia polymorpha HOM05D000513 ORTHO05D003825 5.6e-08 61.2 57 43.9
Prupe.4G076100 Prunus persica HOM05D000513 ORTHO05D003825 5.6e-08 61.2 69 39.1
THA.LOC104812845 Tarenaya hassleriana HOM05D000513 ORTHO05D003825 5.6e-08 61.2 67 43.3
BcaC07g38128 Brassica carinata HOM05D000513 ORTHO05D003825 9.5e-08 60.5 74 41.9
A08p13610 Brassica napus HOM05D000513 ORTHO05D003825 9.5e-08 60.5 74 41.9
BolC8t48555H Brassica oleracea HOM05D000513 ORTHO05D003825 9.5e-08 60.5 74 41.9
BraA08t33347Z Brassica rapa HOM05D000513 ORTHO05D003825 9.5e-08 60.5 74 41.9
FAN25G0451 Fragaria x ananassa HOM05D000513 ORTHO05D003825 9.5e-08 60.5 63 47.6
Aa31LG6G930 Aethionema arabicum HOM05D000513 ORTHO05D003825 1.2e-07 60.1 65 40.0
AL7G36170 Arabidopsis lyrata HOM05D000513 ORTHO05D003825 1.2e-07 60.1 56 44.6
CAN.G257.22 Capsicum annuum HOM05D000513 ORTHO05D003825 1.2e-07 60.1 69 37.7
Cc09_g09040 Coffea canephora HOM05D000513 ORTHO05D003825 1.2e-07 60.1 66 45.5
Nn4g26493 Nelumbo nucifera HOM05D000513 ORTHO05D003825 1.2e-07 60.1 70 42.9
PGSC0003DMG400008322 Solanum tuberosum HOM05D000513 ORTHO05D003825 1.2e-07 60.1 69 39.1
Ah.14g086610 Amaranthus hybridus HOM05D000513 ORTHO05D003825 1.6e-07 59.7 66 45.5
Aqoxy1G01800 Aquilegia oxysepala HOM05D000513 ORTHO05D003825 1.6e-07 59.7 63 44.4
Nitab4.5_0011941g0020 Nicotiana tabacum HOM05D000513 ORTHO05D003825 1.6e-07 59.7 71 42.3
Sp7g15870 Schrenkiella parvula HOM05D000513 ORTHO05D003825 1.6e-07 59.7 74 40.5
AT4G18240 Arabidopsis thaliana HOM05D000513 ORTHO05D003825 2.1e-07 59.3 56 44.6
CSS0046806 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D003825 2.1e-07 59.3 75 40.0
Gohir.D06G205100 Gossypium hirsutum HOM05D000513 ORTHO05D003825 2.1e-07 59.3 70 44.3
Gorai.010G239400 Gossypium raimondii HOM05D000513 ORTHO05D003825 2.1e-07 59.3 70 44.3
CANSAT35G1298 Cannabis sativa HOM05D000513 ORTHO05D003825 2.8e-07 58.9 56 44.6
Lsat_1_v5_gn_7_34440 Lactuca sativa HOM05D000513 ORTHO05D003825 2.8e-07 58.9 74 35.1
SMO117G0255 Selaginella moellendorffii HOM05D000513 ORTHO05D003825 2.8e-07 58.9 57 43.9
Sopen02g020100 Solanum pennellii HOM05D000513 ORTHO05D003825 2.8e-07 58.9 69 39.1
COL.COLO4_07500 Corchorus olitorius HOM05D000513 ORTHO05D003825 3.6e-07 58.5 73 42.5
PSO541G3505 Papaver somniferum HOM05D000513 ORTHO05D003825 3.6e-07 58.5 65 43.1
PSO675G5345 Papaver somniferum HOM05D000513 ORTHO05D003825 3.6e-07 58.5 65 43.1
Potri.001G351800 Populus trichocarpa HOM05D000513 ORTHO05D003825 3.6e-07 58.5 70 42.9
PRCOL_00002119 Prasinoderma coloniale HOM05D000513 ORTHO05D003825 3.6e-07 58.5 58 37.9
unitig_37.g12107 Utricularia gibba HOM05D000513 ORTHO05D003825 3.6e-07 58.5 58 44.8
BcaB02g08602 Brassica carinata HOM05D000513 ORTHO05D003825 4.7e-07 58.2 74 40.5
BcaB04g18467 Brassica carinata HOM05D000513 ORTHO05D003825 4.7e-07 58.2 74 40.5
Nn3g20850 Nelumbo nucifera HOM05D000513 ORTHO05D003825 4.7e-07 58.2 63 46.0
Dinv32283 Davidia involucrata HOM05D000513 ORTHO05D003825 6.2e-07 57.8 66 42.4
ECA236G3134 Erigeron canadensis HOM05D000513 ORTHO05D003825 6.2e-07 57.8 59 40.7
Gohir.A06G197700 Gossypium hirsutum HOM05D000513 ORTHO05D003825 6.2e-07 57.8 70 42.9
Gohir.D10G039600 Gossypium hirsutum HOM05D000513 ORTHO05D003825 6.2e-07 57.8 63 44.4
Gorai.011G041700 Gossypium raimondii HOM05D000513 ORTHO05D003825 6.2e-07 57.8 63 44.4
Hma1.2p1_0137F.1_g062340 Hydrangea macrophylla HOM05D000513 ORTHO05D003825 6.2e-07 57.8 69 40.6
MBI07_g07819_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D003825 6.2e-07 57.8 68 38.2
DCAR_027953 Daucus carota HOM05D000513 ORTHO05D003825 8.0e-07 57.4 66 43.9
MD05G1289400 Malus domestica HOM05D000513 ORTHO05D003825 8.0e-07 57.4 69 39.1
QL05p059401 Quercus lobata HOM05D000513 ORTHO05D003825 8.0e-07 57.4 63 44.4
Sabra16G0231300 Salix brachista HOM05D000513 ORTHO05D003825 8.0e-07 57.4 70 42.9
CiPaw.09G128900 Carya illinoinensis HOM05D000513 ORTHO05D003825 1.1e-06 57.0 66 43.9
CDE02G2485 Ceratophyllum demersum HOM05D000513 ORTHO05D003825 1.1e-06 57.0 66 40.9
AUR62030255 Chenopodium quinoa HOM05D000513 ORTHO05D003825 1.1e-06 57.0 69 39.1
Lalb_Chr13g0291431 Lupinus albus HOM05D000513 ORTHO05D003825 1.1e-06 57.0 56 44.6
Solyc02g071040.3 Solanum lycopersicum HOM05D000513 ORTHO05D003825 1.1e-06 57.0 69 37.7
Gohir.A10G038700 Gossypium hirsutum HOM05D000513 ORTHO05D003825 1.4e-06 56.6 63 42.9
HanXRQChr04g0117251 Helianthus annuus HOM05D000513 ORTHO05D003825 1.4e-06 56.6 71 33.8
SGA_v2.0_scaffold333G49008 Striga asiatica HOM05D000513 ORTHO05D003825 1.4e-06 56.6 66 43.9
GSVIVG01021404001 Vitis vinifera HOM05D000513 ORTHO05D003825 1.4e-06 56.6 63 42.9
MD10G1265500 Malus domestica HOM05D000513 ORTHO05D003825 1.8e-06 56.2 63 44.4
Thecc.06G155000 Theobroma cacao HOM05D000513 ORTHO05D003825 1.8e-06 56.2 70 41.4
arahy.Tifrunner.gnm1.ann1.5JCE23 Arachis hypogaea HOM05D000513 ORTHO05D003825 2.3e-06 55.8 58 43.1
Glyma.05G127800 Glycine max HOM05D000513 ORTHO05D003825 2.3e-06 55.8 66 42.4
Actinidia16732 Actinidia chinensis HOM05D000513 ORTHO05D003825 3.1e-06 55.5 46 56.5
Sc05g0006470 Simmondsia chinensis HOM05D000513 ORTHO05D003825 3.1e-06 55.5 90 36.7
Glyma.08G082600 Glycine max HOM05D000513 ORTHO05D003825 5.2e-06 54.7 71 38.0
Psat7g092080 Pisum sativum HOM05D000513 ORTHO05D003825 5.2e-06 54.7 69 39.1
TWI73G1282 Tripterygium wilfordii HOM05D000513 ORTHO05D003825 5.2e-06 54.7 66 40.9
Lj1C1184T1 Lonicera japonica HOM05D000513 ORTHO05D003825 6.8e-06 54.3 63 39.7
HPP92_023427 Vanilla planifolia HOM05D000513 ORTHO05D003825 6.8e-06 54.3 56 39.3
VMungo0251G0935 Vigna mungo HOM05D000513 ORTHO05D003825 6.8e-06 54.3 66 40.9
arahy.Tifrunner.gnm1.ann1.MB9SFC Arachis hypogaea HOM05D000513 ORTHO05D003825 8.9e-06 53.9 58 41.4
CDE05G0345 Ceratophyllum demersum HOM05D000513 ORTHO05D005786 8.9e-06 53.9 60 43.3
Pp3c15_14300 Physcomitrium patens HOM05D000513 ORTHO05D003825 8.9e-06 53.9 57 47.4


User provided reference genes

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