Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 0.0e+00 1112.4 559 100.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 5.6e-245 850.9 534 80.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 5.2e-243 844.3 556 75.5
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 2.0e-242 842.4 566 75.3
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 7.0e-240 833.9 560 73.6
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-236 823.2 536 75.2
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 8.0e-236 820.5 553 72.7
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 5.2e-235 817.8 553 74.3
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 6.8e-235 817.4 522 77.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.5e-234 816.2 535 75.3
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.0e-231 805.8 552 71.9
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.0e-231 804.3 533 76.4
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 1.3e-230 803.1 561 71.8
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 5.0e-230 801.2 554 71.7
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 8.1e-228 793.9 557 70.6
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 3.1e-227 792.0 528 74.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 9.9e-226 786.9 550 71.3
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 2.2e-225 785.8 535 72.5
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.4e-224 783.1 550 70.9
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.4e-224 782.3 538 72.7
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.1e-224 781.6 531 73.3
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.1e-224 781.6 531 73.4
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 5.4e-224 781.2 548 69.9
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 9.2e-224 780.4 531 73.3
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.5e-223 778.5 523 74.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 7.8e-223 777.3 542 71.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.3e-222 776.5 556 69.2
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 3.3e-221 771.9 542 71.6
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.6e-220 768.5 539 70.7
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.6e-220 768.5 551 68.8
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 6.2e-220 767.7 531 71.9
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.1e-219 766.9 545 70.3
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.8e-219 766.1 557 70.0
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.5e-218 763.1 545 70.8
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.9e-217 758.8 585 65.5
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 8.4e-217 757.3 528 70.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 5.4e-216 754.6 527 70.8
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.1e-215 752.7 527 70.0
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.5e-215 751.9 531 69.9
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 4.6e-215 751.5 533 70.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.7e-214 749.6 528 69.9
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.9e-214 748.4 564 66.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 5.1e-214 748.0 471 76.9
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 6.6e-214 747.7 529 69.6
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 4.3e-213 745.0 569 65.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 3.6e-212 741.9 555 68.3
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 4.7e-212 741.5 491 74.5
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 6.9e-211 737.6 559 65.3
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 9.0e-211 737.3 561 66.3
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 5.8e-210 734.6 510 70.6
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-209 733.0 550 67.3
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.4e-208 729.9 554 67.0
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 6.6e-206 721.1 558 64.7
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.5e-205 719.2 557 64.5
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 7.3e-205 717.6 540 65.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.6e-204 715.3 521 69.1
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 4.8e-204 714.9 529 66.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.2e-204 714.5 510 68.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 6.9e-203 711.1 540 67.0
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-202 710.3 557 65.0
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.0e-202 709.5 537 66.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 7.6e-202 707.6 532 67.9
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 9.9e-202 707.2 565 64.6
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 9.9e-202 707.2 489 70.6
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.4e-200 703.4 607 59.1
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.2e-199 700.3 487 72.1
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 7.9e-199 697.6 545 64.4
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 7.9e-199 697.6 486 69.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.9e-198 695.3 545 68.6
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 5.6e-197 691.4 583 60.7
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 9.6e-197 690.6 560 61.8
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 3.1e-195 685.6 518 66.8
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.0e-195 685.3 475 71.6
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.9e-193 679.1 501 66.1
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.1e-192 677.2 605 58.7
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.4e-192 676.0 489 68.7
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 2.4e-192 676.0 546 60.3
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.0e-190 670.6 485 67.6
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 6.7e-190 667.9 553 63.3
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 5.3e-187 658.3 552 61.1
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 5.3e-187 658.3 528 62.1
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.6e-186 656.0 419 75.7
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.4e-185 651.0 424 78.1
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-184 650.6 559 58.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.9e-184 649.8 522 61.5
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 9.7e-181 637.5 531 60.6
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 3.1e-179 632.5 502 63.9
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-174 617.1 536 62.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 2.3e-174 616.3 551 59.0
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.9e-174 615.5 454 68.3
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-173 614.0 517 60.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.1e-171 605.5 526 58.0
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.1e-171 605.5 528 58.0
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.9e-168 596.7 496 60.7
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.9e-168 596.7 500 60.2
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.7e-167 592.0 498 59.6
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.1e-167 591.7 499 59.5
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 7.9e-167 591.3 488 59.0
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 1.1e-163 580.9 515 56.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.4e-163 579.7 452 62.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.4e-163 579.7 567 54.1
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 4.7e-159 565.5 454 65.4
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-158 563.1 500 57.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 8.8e-158 561.2 527 56.7
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 8.5e-153 544.7 505 59.6
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.5e-149 533.9 489 56.4
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-147 526.6 488 55.3
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.7e-146 523.1 425 60.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.0e-142 511.1 394 62.7
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.8e-142 510.4 481 55.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 5.2e-142 508.8 490 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.5e-141 507.3 505 50.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.8e-140 503.1 328 73.8
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 6.3e-140 501.9 563 46.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.1e-139 499.2 342 71.9
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 5.9e-138 495.4 500 50.6
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.3e-134 483.4 394 59.9
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.3e-132 477.6 394 64.7
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.4e-131 474.2 290 80.0
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 4.5e-130 469.2 322 70.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.0e-129 468.0 458 53.5
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 3.9e-129 466.1 330 68.5
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.2e-119 434.5 339 65.2
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.6e-119 434.1 333 65.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 5.8e-117 425.6 414 55.8
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 9.8e-117 424.9 321 66.0
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-113 414.1 341 57.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.3e-113 413.7 652 37.7
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 6.2e-111 405.6 443 52.4
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 6.9e-94 349.0 460 44.3
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.5e-88 331.3 233 62.7
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.3e-88 328.9 277 56.7
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.2e-83 313.2 220 62.3
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.6e-80 302.8 346 46.0
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.9e-76 290.4 218 67.0
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 3.8e-76 290.0 599 33.6
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.8e-76 290.0 218 67.0
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 5.7e-72 276.2 186 72.6
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.1e-70 271.9 161 80.7
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.3e-70 269.6 190 71.1
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 4.5e-69 266.5 257 53.7
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 9.3e-67 258.8 146 84.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 7.9e-66 255.8 187 65.8
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.7e-65 252.7 474 35.7
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.0e-57 227.3 196 53.1
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-55 221.5 146 71.2
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 6.3e-55 219.5 179 63.1
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.7e-50 204.1 147 68.7
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 5.1e-49 199.9 189 57.7
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-44 184.5 118 74.6
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.5e-44 183.0 130 68.5
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 1.3e-39 168.7 206 44.7
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.4e-38 165.2 198 43.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.4e-38 164.5 171 43.9
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.1e-38 162.5 143 62.2
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.5e-36 156.4 107 68.2
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.4e-27 125.9 76 75.0
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 9.5e-19 99.4 66 69.7
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-18 99.0 126 39.7
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.4e-14 85.5 72 62.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.8e-14 85.1 72 58.3
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.0e-12 79.3 64 62.5


User provided reference genes

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