Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.6e-103 379.4 192 100.0
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 7.1e-91 337.4 183 91.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.4e-83 312.4 177 86.4
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 3.5e-82 308.5 177 84.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.0e-82 307.8 177 85.3
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.3e-81 306.6 196 79.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.3e-81 306.6 196 79.1
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.8e-81 306.2 177 84.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.7e-81 304.3 174 85.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.5e-80 302.4 177 83.1
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 5.6e-80 301.2 177 81.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.6e-79 299.7 177 81.9
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 6.9e-78 294.3 177 80.8
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.2e-77 293.5 177 81.9
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-77 293.1 177 81.4
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.0e-77 292.7 179 79.9
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.6e-77 292.4 177 77.4
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 3.4e-77 292.0 178 79.8
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.5e-77 291.6 177 80.2
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.8e-77 291.2 177 78.0
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 7.6e-77 290.8 177 78.0
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 7.6e-77 290.8 177 79.1
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 9.9e-77 290.4 178 79.2
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 9.9e-77 290.4 177 79.1
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.7e-76 289.7 177 79.7
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.7e-76 289.7 177 79.1
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.2e-76 289.3 177 78.5
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 3.8e-76 288.5 177 79.7
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 3.8e-76 288.5 177 79.7
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.4e-76 287.7 177 79.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.4e-75 286.6 177 79.1
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.1e-75 284.3 177 77.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 9.3e-75 283.9 177 78.0
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.1e-74 282.7 192 68.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.1e-74 282.7 177 78.0
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.1e-74 282.7 177 77.4
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 2.1e-74 282.7 177 78.5
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.1e-74 282.7 177 78.5
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 2.7e-74 282.3 178 77.5
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.6e-74 281.6 177 76.8
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 7.9e-74 280.8 177 75.7
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 7.9e-74 280.8 177 76.8
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.0e-73 280.4 178 77.5
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.0e-73 280.4 177 78.0
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-73 280.0 178 77.0
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.8e-73 279.6 178 76.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.8e-73 279.6 178 76.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 2.3e-73 279.3 177 76.8
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.0e-73 278.9 161 86.3
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.0e-73 278.9 177 79.1
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 3.9e-73 278.5 177 76.3
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.1e-73 278.1 177 75.7
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 8.7e-73 277.3 177 75.7
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 8.7e-73 277.3 177 76.3
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-72 276.9 177 71.8
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.5e-72 276.6 177 75.7
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 4.3e-72 275.0 177 78.5
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.4e-72 274.2 177 70.6
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 7.4e-72 274.2 177 74.6
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 7.4e-72 274.2 177 76.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 9.6e-72 273.9 173 76.3
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 9.6e-72 273.9 177 75.1
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.1e-71 272.7 177 74.6
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.8e-71 271.6 173 75.7
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 4.8e-71 271.6 161 84.5
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.2e-71 271.2 204 66.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 8.2e-71 270.8 177 75.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.1e-70 270.4 177 75.1
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.4e-70 270.0 204 65.7
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.4e-70 270.0 177 75.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 5.3e-70 268.1 172 73.8
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 5.3e-70 268.1 177 73.4
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 9.0e-70 267.3 173 76.9
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.0e-69 266.2 177 75.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.6e-69 265.8 177 72.3
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.6e-69 265.8 172 73.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.5e-69 265.0 183 70.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.8e-69 264.6 172 73.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 7.6e-69 264.2 177 72.3
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 7.6e-69 264.2 177 72.9
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.0e-68 263.8 178 72.5
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.9e-68 262.3 177 71.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 3.8e-68 261.9 163 78.5
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.9e-68 261.5 177 72.9
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 6.5e-68 261.2 180 71.7
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.4e-67 260.0 177 75.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.2e-67 258.8 179 70.4
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 3.2e-67 258.8 177 73.4
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 3.2e-67 258.8 180 71.1
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.2e-67 258.8 180 71.1
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 3.2e-67 258.8 178 70.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.2e-67 258.8 177 72.9
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.2e-67 258.8 177 72.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.2e-67 258.8 177 72.9
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 5.5e-67 258.1 177 73.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 7.1e-67 257.7 158 81.0
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.2e-66 256.9 177 72.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 3.5e-66 255.4 177 70.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 4.6e-66 255.0 197 67.0
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.6e-66 255.0 197 67.0
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 4.6e-66 255.0 197 67.0
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 6.0e-66 254.6 177 72.3
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.3e-65 253.4 177 71.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.8e-65 253.1 177 71.8
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.8e-65 253.1 177 71.2
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 6.7e-65 251.1 177 66.1
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 8.7e-65 250.8 177 71.2
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.5e-64 250.0 177 72.3
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.5e-64 249.2 177 71.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 7.4e-64 247.7 177 71.8
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 7.4e-64 247.7 179 70.4
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 9.7e-64 247.3 177 68.9
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.6e-63 246.5 177 71.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 4.8e-63 245.0 179 69.8
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 6.3e-63 244.6 178 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.1e-62 241.9 177 67.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.2e-61 240.4 177 67.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 2.6e-61 239.2 177 68.4
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 3.2e-59 232.3 173 65.9
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.5e-59 231.5 177 63.3
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 9.4e-59 230.7 157 72.6
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 9.4e-59 230.7 157 72.6
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.3e-55 220.3 177 61.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 6.3e-55 218.0 177 61.6
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 8.5e-52 207.6 131 75.6
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.2e-51 204.5 170 58.8
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 6.1e-50 201.4 170 57.6
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-49 200.3 156 68.6
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 5.7e-48 194.9 179 59.8
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 3.7e-47 192.2 161 62.7
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.8e-46 189.9 167 56.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 6.5e-44 181.4 178 56.7
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 3.9e-41 172.2 177 55.9
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.2e-37 160.6 177 50.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.7e-34 149.4 178 45.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.8e-33 146.7 86 79.1
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.0e-33 146.0 88 76.1
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 4.0e-33 145.6 155 56.8
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.8e-31 139.4 90 73.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.5e-29 132.1 159 44.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 5.0e-28 128.6 72 81.9
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.8e-23 112.1 70 74.3
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.4e-22 108.6 177 41.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 7.7e-21 104.8 178 39.3
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 7.7e-21 104.8 153 37.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.7e-20 103.6 67 77.6
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 5.5e-19 98.6 153 38.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.8e-18 96.3 66 65.2
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.5e-16 90.5 156 36.5
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.6e-16 89.7 66 63.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.2e-13 80.9 103 41.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 5.0e-12 75.5 62 58.1
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 8.6e-12 74.7 113 44.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.4e-08 62.8 79 45.6
CAN.G10322.1 Capsicum annuum HOM05D001108 ORTHO05D115629 4.1e-06 55.8 45 64.4
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 9.2e-06 54.7 55 52.7
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 9.2e-06 54.7 55 52.7


User provided reference genes

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