Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 9.4e-101 370.5 238 100.0
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.3e-49 200.7 265 58.5
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.6e-44 183.7 257 58.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 2.1e-36 156.8 267 49.1
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.8e-36 156.4 267 47.9
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.6e-34 149.8 98 74.5
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.4e-34 149.4 229 52.0
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 4.4e-34 149.1 87 79.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.9e-33 146.4 241 40.2
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.1e-32 144.4 84 75.0
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.4e-32 143.3 243 53.5
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 3.2e-32 142.9 93 72.0
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 3.2e-32 142.9 86 77.9
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 4.2e-32 142.5 84 78.6
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 4.2e-32 142.5 90 73.3
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 9.2e-32 141.4 92 71.7
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.1e-31 140.2 80 78.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.7e-31 139.8 87 73.6
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.7e-31 139.8 82 76.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.7e-31 139.8 87 77.0
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 3.5e-31 139.4 84 76.2
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.5e-31 139.4 87 75.9
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 4.6e-31 139.0 252 40.1
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 6.0e-31 138.7 86 74.4
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 7.8e-31 138.3 82 76.8
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 7.8e-31 138.3 82 79.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.3e-30 137.5 96 67.7
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.3e-30 137.5 235 49.4
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.7e-30 137.1 90 67.8
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.7e-30 137.1 94 69.1
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.3e-30 136.7 96 67.7
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 3.9e-30 136.0 96 66.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 5.1e-30 135.6 86 73.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 5.1e-30 135.6 238 45.4
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.6e-30 135.2 82 75.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 6.6e-30 135.2 88 75.0
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 6.6e-30 135.2 238 50.8
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 8.7e-30 134.8 246 51.2
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.5e-29 134.0 250 40.0
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-29 134.0 96 65.6
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.5e-29 134.0 227 41.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.9e-29 133.7 246 50.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.5e-29 133.3 87 66.7
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 3.3e-29 132.9 82 75.6
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 4.3e-29 132.5 88 75.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.3e-29 132.5 242 40.9
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.3e-29 132.5 242 40.9
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 5.6e-29 132.1 87 71.3
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.6e-29 132.1 83 71.1
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 5.6e-29 132.1 88 76.1
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 7.3e-29 131.7 87 71.3
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 7.3e-29 131.7 242 40.1
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 7.3e-29 131.7 96 67.7
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.2e-28 131.0 237 48.1
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.2e-28 131.0 78 71.8
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.6e-28 130.6 87 69.0
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 2.1e-28 130.2 232 40.1
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.1e-28 130.2 83 69.9
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 2.1e-28 130.2 77 79.2
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.2e-28 128.6 71 81.7
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.2e-28 128.6 71 81.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.2e-28 128.6 77 72.7
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 8.1e-28 128.3 230 44.8
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.1e-27 127.9 77 72.7
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.4e-27 127.5 87 70.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.8e-27 127.1 231 42.9
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.8e-27 127.1 71 80.3
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.8e-27 127.1 247 45.3
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.8e-27 127.1 78 75.6
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.4e-27 126.7 233 45.9
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 2.4e-27 126.7 92 69.6
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.4e-27 126.7 83 77.1
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 5.3e-27 125.6 92 69.6
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 6.9e-27 125.2 101 63.4
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 6.9e-27 125.2 88 65.9
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 6.9e-27 125.2 225 39.6
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 6.9e-27 125.2 86 67.4
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 9.0e-27 124.8 86 67.4
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.2e-26 124.4 235 47.7
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.2e-26 124.4 92 63.0
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.5e-26 124.0 83 73.5
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.5e-26 124.0 82 70.7
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.0e-26 123.6 82 68.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 2.0e-26 123.6 68 82.4
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.4e-26 122.9 90 66.7
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 5.8e-26 122.1 82 69.5
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 5.8e-26 122.1 92 68.5
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 9.9e-26 121.3 83 68.7
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 9.9e-26 121.3 96 64.6
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.3e-25 120.9 241 39.8
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.3e-25 120.9 84 70.2
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.9e-25 119.8 79 72.2
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 4.9e-25 119.0 250 45.2
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 6.4e-25 118.6 86 67.4
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 8.4e-25 118.2 97 59.8
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.7e-23 113.2 242 36.8
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 4.6e-23 112.5 240 35.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 4.6e-23 112.5 63 79.4
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 7.8e-23 111.7 82 65.9
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.0e-22 109.8 74 73.0
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 5.1e-22 109.0 76 63.2
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 5.1e-22 109.0 77 61.0
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 6.6e-22 108.6 75 65.3
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 8.7e-22 108.2 75 64.0
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 8.7e-22 108.2 75 64.0
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 8.7e-22 108.2 75 64.0
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.1e-21 107.8 77 64.9
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.5e-21 107.5 75 62.7
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.5e-21 107.5 93 52.7
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.5e-21 107.5 97 57.7
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.9e-21 107.1 86 59.3
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-21 107.1 75 64.0
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-21 107.1 86 59.3
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.9e-21 107.1 86 59.3
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.9e-21 107.1 75 64.0
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.9e-21 107.1 96 52.1
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.5e-21 106.7 104 54.8
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.3e-21 106.3 76 60.5
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.3e-21 106.3 75 62.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 4.3e-21 105.9 76 63.2
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 4.3e-21 105.9 104 54.8
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 4.3e-21 105.9 92 59.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 5.6e-21 105.5 85 58.8
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 5.6e-21 105.5 75 62.7
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 2.1e-20 103.6 88 53.4
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 2.8e-20 103.2 86 61.6
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 6.2e-20 102.1 72 68.1
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 8.1e-20 101.7 85 54.1
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 9.0e-19 98.2 225 40.4
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-18 97.8 73 58.9
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.2e-18 97.8 73 58.9
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.0e-18 97.1 78 57.7
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.2e-17 93.6 77 55.8
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.2e-17 93.6 77 55.8
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.2e-17 93.6 78 53.8
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 8.4e-17 91.7 79 57.0
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 4.2e-16 89.4 77 53.2
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 2.1e-15 87.0 77 53.2
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.6e-10 68.6 42 69.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-07 59.7 58 44.8


User provided reference genes

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