Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26387 Davidia involucrata HOM05D000357 ORTHO05D000242 1.1e-40 169.5 80 100.0
Dinv07996 Davidia involucrata HOM05D000357 ORTHO05D000242 4.2e-37 157.5 96 82.3
Dinv22935 Davidia involucrata HOM05D000357 ORTHO05D000242 2.2e-17 92.0 144 43.1
FAN03G2863 Fragaria x ananassa HOM05D000357 ORTHO05D000242 3.6e-12 74.7 76 46.1
TAR374G1415 Trochodendron aralioides HOM05D000357 ORTHO05D000242 3.6e-12 74.7 150 32.7
PGSC0003DMG400037614 Solanum tuberosum HOM05D000357 ORTHO05D000242 3.3e-10 68.2 136 31.6
CAN.G1081.16 Capsicum annuum HOM05D000357 ORTHO05D000242 9.7e-10 66.6 37 75.7
Hma1.2p1_0488F.1_g163990 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 9.7e-10 66.6 53 58.5
Hma1.2p1_0654F.1_g196360 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 1.3e-09 66.2 53 56.6
Nitab4.5_0001095g0010 Nicotiana tabacum HOM05D000357 ORTHO05D000242 3.7e-09 64.7 127 30.7
Solyc07g055090.1 Solanum lycopersicum HOM05D000357 ORTHO05D000242 3.7e-09 64.7 37 70.3
PGSC0003DMG400036158 Solanum tuberosum HOM05D000357 ORTHO05D000242 3.7e-09 64.7 37 73.0
Cpa.g.sc107.19 Carica papaya HOM05D000357 ORTHO05D000242 4.8e-09 64.3 37 67.6
COL.COLO4_15137 Corchorus olitorius HOM05D000357 ORTHO05D000242 6.3e-09 63.9 117 32.5
Lj8C30T14 Lonicera japonica HOM05D000357 ORTHO05D000242 8.2e-09 63.5 86 40.7
EL10Ac7g16716 Beta vulgaris HOM05D000357 ORTHO05D000242 1.1e-08 63.2 94 38.3
HanXRQChr08g0225021 Helianthus annuus HOM05D000357 ORTHO05D000242 1.1e-08 63.2 50 56.0
CAN.G1736.5 Capsicum annuum HOM05D000357 ORTHO05D000242 3.1e-08 61.6 37 70.3
COL.COLO4_14189 Corchorus olitorius HOM05D000357 ORTHO05D000242 3.1e-08 61.6 37 70.3
COL.COLO4_37083 Corchorus olitorius HOM05D000357 ORTHO05D000242 3.1e-08 61.6 140 28.6
CiPaw.03G040800 Carya illinoinensis HOM05D000357 ORTHO05D000242 4.1e-08 61.2 37 67.6
CiPaw.03G040900 Carya illinoinensis HOM05D000357 ORTHO05D000242 4.1e-08 61.2 37 67.6
Nitab4.5_0013050g0020 Nicotiana tabacum HOM05D000357 ORTHO05D000242 5.3e-08 60.8 37 67.6
HanXRQChr14g0461761 Helianthus annuus HOM05D000357 ORTHO05D000242 7.0e-08 60.5 37 67.6
MD02G1204500 Malus domestica HOM05D000357 ORTHO05D000242 7.0e-08 60.5 37 64.9
Peaxi162Scf00192g00105 Petunia axillaris HOM05D000357 ORTHO05D000242 7.0e-08 60.5 35 68.6
Peaxi162Scf00192g01016 Petunia axillaris HOM05D000357 ORTHO05D000242 7.0e-08 60.5 35 68.6
Nitab4.5_0008495g0010 Nicotiana tabacum HOM05D000357 ORTHO05D000242 9.1e-08 60.1 37 64.9
PGSC0003DMG400047330 Solanum tuberosum HOM05D000357 ORTHO05D000242 9.1e-08 60.1 37 64.9
Manes.01G008701 Manihot esculenta HOM05D000357 ORTHO05D000242 1.2e-07 59.7 119 31.1
QL12p039618 Quercus lobata HOM05D000357 ORTHO05D000242 1.2e-07 59.7 36 66.7
PGSC0003DMG400031013 Solanum tuberosum HOM05D000357 ORTHO05D000242 1.2e-07 59.7 37 64.9
DCAR_009436 Daucus carota HOM05D000357 ORTHO05D000242 1.6e-07 59.3 74 44.6
DCAR_009437 Daucus carota HOM05D000357 ORTHO05D000242 1.6e-07 59.3 74 44.6
Duzib177G0304 Durio zibethinus HOM05D000357 ORTHO05D000242 1.6e-07 59.3 37 64.9
Gorai.007G247400 Gossypium raimondii HOM05D000357 ORTHO05D000242 1.6e-07 59.3 37 67.6
Nitab4.5_0000072g0340 Nicotiana tabacum HOM05D000357 ORTHO05D000242 1.6e-07 59.3 33 72.7
Gohir.D11G234750 Gossypium hirsutum HOM05D000357 ORTHO05D000242 2.0e-07 58.9 37 67.6
Oeu006049.1 Olea europaea HOM05D000357 ORTHO05D000242 2.0e-07 58.9 37 64.9
RcHm_v2.0_Chr1g0350541 Rosa chinensis HOM05D000357 ORTHO05D000242 2.0e-07 58.9 37 62.2
DCAR_011064 Daucus carota HOM05D000357 ORTHO05D000242 2.7e-07 58.5 74 43.2
FAN10G3258 Fragaria x ananassa HOM05D000357 ORTHO05D000242 2.7e-07 58.5 37 59.5
Gohir.A11G221300 Gossypium hirsutum HOM05D000357 ORTHO05D000242 2.7e-07 58.5 37 67.6
Nn7g37412 Nelumbo nucifera HOM05D000357 ORTHO05D000242 2.7e-07 58.5 146 29.5
Lsat_1_v5_gn_2_129721 Lactuca sativa HOM05D000357 ORTHO05D000242 3.5e-07 58.2 78 38.5
MD02G1204600 Malus domestica HOM05D000357 ORTHO05D000242 3.5e-07 58.2 37 64.9
Zm00001eb181400 Zea mays HOM05D000357 ORTHO05D000242 3.5e-07 58.2 37 62.2
CSS0017601 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 4.5e-07 57.8 144 29.9
FvH4_7g11860 Fragaria vesca HOM05D000357 ORTHO05D000242 4.5e-07 57.8 37 59.5
FAN06G1596 Fragaria x ananassa HOM05D000357 ORTHO05D000242 4.5e-07 57.8 37 59.5
FAN06G2971 Fragaria x ananassa HOM05D000357 ORTHO05D000242 4.5e-07 57.8 37 59.5
FAN10G2505 Fragaria x ananassa HOM05D000357 ORTHO05D000242 4.5e-07 57.8 37 59.5
Prupe.2G145200 Prunus persica HOM05D000357 ORTHO05D000242 4.5e-07 57.8 83 42.2
SGA_v2.0_scaffold486G52378 Striga asiatica HOM05D000357 ORTHO05D000242 4.5e-07 57.8 43 55.8
Thecc.01G087900 Theobroma cacao HOM05D000357 ORTHO05D000242 4.5e-07 57.8 130 29.2
Cc01_g01280 Coffea canephora HOM05D000357 ORTHO05D000242 5.9e-07 57.4 161 29.8
DCAR_013379 Daucus carota HOM05D000357 ORTHO05D000242 5.9e-07 57.4 32 71.9
Migut.F00424 Erythranthe guttata HOM05D000357 ORTHO05D000242 5.9e-07 57.4 37 59.5
Lj8C35T17 Lonicera japonica HOM05D000357 ORTHO05D000242 5.9e-07 57.4 37 62.2
Os02g0530300 Oryza sativa ssp. japonica HOM05D000357 ORTHO05D000242 5.9e-07 57.4 37 62.2
Peaxi162Scf00192g01017 Petunia axillaris HOM05D000357 ORTHO05D000242 5.9e-07 57.4 35 65.7
Cc08_g13480 Coffea canephora HOM05D000357 ORTHO05D000242 7.7e-07 57.0 161 29.8
Nn2g14935 Nelumbo nucifera HOM05D000357 ORTHO05D000242 7.7e-07 57.0 138 26.8
HPP92_019527 Vanilla planifolia HOM05D000357 ORTHO05D000242 7.7e-07 57.0 63 46.0
Lj1g0000667 Lotus japonicus HOM05D000357 ORTHO05D000242 1.0e-06 56.6 37 64.9
Nitab4.5_0000072g0290 Nicotiana tabacum HOM05D000357 ORTHO05D000242 1.0e-06 56.6 36 66.7
Eucgr.C03794 Eucalyptus grandis HOM05D000357 ORTHO05D000242 1.3e-06 56.2 37 62.2
Nitab4.5_0000072g0310 Nicotiana tabacum HOM05D000357 ORTHO05D000242 1.3e-06 56.2 35 65.7
Oeu021731.1 Olea europaea HOM05D000357 ORTHO05D000242 1.3e-06 56.2 37 62.2
Sabra09G0111800 Salix brachista HOM05D000357 ORTHO05D000242 1.3e-06 56.2 122 29.5
Sabra09G0114500 Salix brachista HOM05D000357 ORTHO05D000242 1.3e-06 56.2 122 29.5
Oeu021732.1 Olea europaea HOM05D000357 ORTHO05D000242 1.7e-06 55.8 37 62.2
VMungo0251G0846 Vigna mungo HOM05D000357 ORTHO05D000242 1.7e-06 55.8 33 63.6
MD07G1258500 Malus domestica HOM05D000357 ORTHO05D000242 2.2e-06 55.5 37 59.5
Manes.01G017400 Manihot esculenta HOM05D000357 ORTHO05D000242 2.2e-06 55.5 84 38.1
Nitab4.5_0000072g0320 Nicotiana tabacum HOM05D000357 ORTHO05D000242 2.2e-06 55.5 36 63.9
Oeu028171.1 Olea europaea HOM05D000357 ORTHO05D000242 2.2e-06 55.5 37 59.5
SalBow4G2081 Salvia bowleyana HOM05D000357 ORTHO05D050786 2.2e-06 55.5 72 40.3
SGA_v2.0_scaffold2G01131 Striga asiatica HOM05D000357 ORTHO05D000242 2.2e-06 55.5 44 56.8
TAR623G1789 Trochodendron aralioides HOM05D000357 ORTHO05D000242 2.2e-06 55.5 33 66.7
CSS0019335 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 2.9e-06 55.1 141 27.7
Ciclev10022558m.g Citrus clementina HOM05D000357 ORTHO05D000242 2.9e-06 55.1 32 71.9
Hma1.2p1_0084F.1_g043590 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 2.9e-06 55.1 143 27.3
Hma1.2p1_0084F.1_g043613 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 2.9e-06 55.1 143 27.3
Lsat_1_v5_gn_3_5140 Lactuca sativa HOM05D000357 ORTHO05D000242 2.9e-06 55.1 159 28.9
PSO339G4312 Papaver somniferum HOM05D000357 ORTHO05D000242 2.9e-06 55.1 55 47.3
PSO384G3393 Papaver somniferum HOM05D000357 ORTHO05D000242 2.9e-06 55.1 55 47.3
HanXRQChr11g0342251 Helianthus annuus HOM05D000357 ORTHO05D000242 3.8e-06 54.7 33 66.7
MBI04_g32259_MAGBIO Magnolia biondii HOM05D000357 ORTHO05D000242 3.8e-06 54.7 33 69.7
MBI12_g34478_MAGBIO Magnolia biondii HOM05D000357 ORTHO05D000242 3.8e-06 54.7 33 63.6
ATR0820G073 Amborella trichopoda HOM05D000357 ORTHO05D000242 5.0e-06 54.3 81 38.3
CARHR232790 Cardamine hirsuta HOM05D000357 ORTHO05D000242 5.0e-06 54.3 40 55.0
COL.COLO4_04119 Corchorus olitorius HOM05D000357 ORTHO05D000242 5.0e-06 54.3 37 59.5
COL.COLO4_36500 Corchorus olitorius HOM05D000357 ORTHO05D000242 5.0e-06 54.3 37 59.5
Lj4g0022579 Lotus japonicus HOM05D000357 ORTHO05D000242 5.0e-06 54.3 33 63.6
Phvul.003G216400 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 5.0e-06 54.3 33 63.6
Sc22g0000460 Simmondsia chinensis HOM05D000357 ORTHO05D000242 5.0e-06 54.3 154 28.6
TWI39G0970 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 5.0e-06 54.3 37 62.2
TWI60G0799 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 5.0e-06 54.3 77 36.4
GSVIVG01019927001 Vitis vinifera HOM05D000357 ORTHO05D000242 5.0e-06 54.3 32 68.8
GSVIVG01019930001 Vitis vinifera HOM05D000357 ORTHO05D000242 5.0e-06 54.3 32 68.8
Atru.chr9.1471 Acer truncatum HOM05D000357 ORTHO05D000242 6.5e-06 53.9 33 66.7
C03p35770 Brassica napus HOM05D000357 ORTHO05D000242 6.5e-06 53.9 132 27.3
Duzib205G1792 Durio zibethinus HOM05D000357 ORTHO05D000242 6.5e-06 53.9 33 66.7
Manes.01G008400 Manihot esculenta HOM05D000357 ORTHO05D000242 6.5e-06 53.9 37 56.8
Nn2g14936 Nelumbo nucifera HOM05D000357 ORTHO05D000242 6.5e-06 53.9 138 26.1
Actinidia14482 Actinidia chinensis HOM05D000357 ORTHO05D000242 8.5e-06 53.5 159 28.3
Migut.B01482 Erythranthe guttata HOM05D000357 ORTHO05D000242 8.5e-06 53.5 37 56.8
FAN01G2939 Fragaria x ananassa HOM05D000357 ORTHO05D000242 8.5e-06 53.5 37 54.1
Gohir.A05G081600 Gossypium hirsutum HOM05D000357 ORTHO05D000242 8.5e-06 53.5 33 63.6
Lj5g0019420 Lotus japonicus HOM05D000357 ORTHO05D000242 8.5e-06 53.5 33 60.6
PSO339G4977 Papaver somniferum HOM05D000357 ORTHO05D000242 8.5e-06 53.5 37 51.4
PSO384G2938 Papaver somniferum HOM05D000357 ORTHO05D000242 8.5e-06 53.5 37 51.4
Peaxi162Scf00620g10011 Petunia axillaris HOM05D000357 ORTHO05D000242 8.5e-06 53.5 50 50.0
Potri.012G130100 Populus trichocarpa HOM05D000357 ORTHO05D000242 8.5e-06 53.5 37 59.5
PGR004G2890 Punica granatum HOM05D000357 ORTHO05D000242 8.5e-06 53.5 37 56.8
Rhsim07G0098300 Rhododendron simsii HOM05D000357 ORTHO05D000242 8.5e-06 53.5 36 61.1
Rhsim07G0099500 Rhododendron simsii HOM05D000357 ORTHO05D000242 8.5e-06 53.5 36 61.1
TPR.G14335 Trifolium pratense HOM05D000357 ORTHO05D000242 8.5e-06 53.5 122 28.7


User provided reference genes

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