Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.1e-261 905.2 476 100.0
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 2.2e-202 709.1 422 90.8
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.2e-195 686.8 479 75.8
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.2e-195 686.8 479 75.8
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 4.7e-184 648.3 496 71.4
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 7.9e-184 647.5 483 72.5
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.0e-183 647.1 483 72.5
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.0e-179 632.9 509 68.8
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 8.5e-178 627.5 480 71.5
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 6.3e-173 611.3 482 70.3
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 2.0e-171 606.3 480 70.6
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 5.9e-171 604.7 469 69.7
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 1.3e-170 603.6 474 67.7
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 2.5e-169 599.4 492 67.5
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 3.2e-169 599.0 480 67.7
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 4.2e-169 598.6 479 68.7
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.1e-168 594.7 472 68.0
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 3.7e-165 585.5 480 67.9
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.1e-161 573.9 483 64.2
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.1e-161 573.9 484 65.9
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 1.5e-161 573.5 483 66.5
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 1.9e-161 573.2 477 64.8
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 9.5e-161 570.9 479 65.6
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 6.1e-160 568.2 479 66.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 6.1e-160 568.2 486 65.6
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 3.0e-159 565.8 496 63.3
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.2e-159 565.1 475 65.1
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 5.2e-159 565.1 492 65.4
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 6.8e-159 564.7 479 63.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 6.8e-159 564.7 498 63.3
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.2e-158 563.9 475 65.1
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 3.4e-158 562.4 484 63.4
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 5.7e-158 561.6 477 63.7
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 5.7e-158 561.6 480 65.8
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.2e-157 559.7 482 64.9
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 2.2e-157 559.7 477 61.6
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.8e-157 559.3 498 62.9
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 6.3e-157 558.1 476 64.7
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 3.1e-156 555.8 476 65.3
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 3.1e-156 555.8 472 63.8
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 9.2e-156 554.3 493 63.1
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 2.7e-155 552.7 486 63.2
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 5.9e-155 551.6 487 62.4
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.3e-154 550.4 518 60.0
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 1.7e-154 550.1 492 63.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 2.9e-154 549.3 478 63.2
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 3.3e-153 545.8 481 62.4
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 5.6e-153 545.0 474 63.3
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.6e-152 542.3 486 64.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 6.1e-152 541.6 472 63.1
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.0e-151 540.8 481 62.6
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.3e-151 539.7 485 61.9
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 2.3e-151 539.7 473 62.4
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 8.9e-151 537.7 478 61.1
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.5e-150 537.0 478 61.5
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 3.4e-150 535.8 476 60.3
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 3.4e-150 535.8 460 63.5
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 4.4e-150 535.4 489 63.6
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.7e-149 533.5 480 61.9
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.2e-149 533.1 501 62.7
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.9e-149 532.7 484 59.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 6.4e-149 531.6 480 61.7
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 5.4e-148 528.5 492 62.6
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 1.6e-147 526.9 475 60.8
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 2.7e-147 526.2 469 62.0
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 2.7e-147 526.2 470 64.5
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.7e-146 523.5 481 60.5
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 3.9e-146 522.3 473 60.7
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 3.9e-146 522.3 471 64.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.9e-146 522.3 486 59.9
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.5e-145 520.4 475 60.6
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.5e-145 520.4 491 59.5
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.3e-145 518.8 482 60.2
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.4e-143 513.8 479 59.9
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 2.3e-143 513.1 473 58.8
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 3.1e-143 512.7 476 58.4
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 4.0e-143 512.3 521 56.6
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.6e-142 509.6 489 58.9
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 4.4e-142 508.8 479 58.7
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 2.2e-141 506.5 481 59.9
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 4.9e-141 505.4 483 59.8
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 8.3e-141 504.6 474 58.0
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.1e-140 504.2 483 59.6
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.2e-139 500.7 511 55.8
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.7e-139 499.6 475 59.8
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 3.5e-139 499.2 478 58.2
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 5.0e-138 495.4 484 59.3
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 8.6e-138 494.6 399 67.4
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 3.3e-137 492.7 474 59.3
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 9.5e-137 491.1 474 58.0
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 9.5e-137 491.1 428 65.9
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 8.9e-135 484.6 476 56.7
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 9.2e-132 474.6 483 55.3
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 1.2e-131 474.2 477 54.9
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.0e-130 471.1 477 54.5
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 6.6e-130 468.4 477 57.2
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 4.3e-129 465.7 472 57.0
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.0e-122 444.5 509 52.3
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 4.3e-121 439.1 432 60.2
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.1e-120 436.8 473 53.3
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 2.1e-120 436.8 305 75.7
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.6e-120 436.0 405 62.5
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.4e-116 423.3 404 60.9
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 3.1e-103 379.8 505 47.9
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 2.2e-101 373.6 321 61.4
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 1.3e-98 364.4 420 51.9
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 6.9e-87 325.5 483 44.1
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 4.5e-86 322.8 312 60.3
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 4.2e-84 316.2 391 49.1
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 4.6e-83 312.8 481 44.5
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.1e-81 308.1 191 84.3
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 9.7e-81 305.1 308 57.5
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.0e-78 297.4 472 41.7
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 2.3e-66 257.3 227 63.0
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 2.9e-61 240.4 347 43.2
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 8.5e-61 238.8 228 58.8
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 5.5e-60 236.1 243 53.9
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 9.7e-57 225.3 216 56.5
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.3e-56 224.9 317 47.9
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 6.1e-51 206.1 235 50.2
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.2e-46 191.8 493 31.6
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 8.3e-40 169.1 147 63.3
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 2.4e-39 167.5 298 37.6
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 1.2e-33 148.7 182 51.6
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 7.5e-33 146.0 111 69.4
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 2.7e-30 137.5 185 43.8
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.2e-27 128.6 137 51.1
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.7e-21 108.2 94 55.3
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 2.1e-19 101.3 74 70.3
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.3e-18 97.8 262 27.9
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.4e-07 62.0 100 46.0
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.4e-07 61.2 115 35.7
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 5.4e-07 60.1 72 45.8
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 9.2e-07 59.3 53 52.8
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 9.2e-07 59.3 53 52.8
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 1.6e-06 58.5 98 31.6
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 1.6e-06 58.5 112 32.1
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.1e-06 58.2 57 45.6
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 2.1e-06 58.2 54 44.4
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 4.6e-06 57.0 129 33.3
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 6.0e-06 56.6 48 52.1
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 6.0e-06 56.6 48 54.2
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 6.0e-06 56.6 48 54.2
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 6.0e-06 56.6 48 54.2
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 6.0e-06 56.6 52 48.1
Thecc.01G222600 Theobroma cacao HOM05D002747 ORTHO05D003069 6.0e-06 56.6 48 54.2
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.8e-06 56.2 116 31.9
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 7.8e-06 56.2 128 29.7
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 7.8e-06 56.2 56 48.2


User provided reference genes

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