Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 3147.8 1591 100.0
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2945.6 1489 100.0
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2714.5 1614 85.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2712.2 1596 86.0
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2695.6 1604 85.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2676.7 1609 83.4
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2675.6 1610 82.7
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2668.3 1610 83.2
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2666.0 1609 82.7
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2659.8 1613 82.3
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2655.2 1632 83.0
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2640.5 1609 82.7
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2637.4 1611 82.8
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2635.1 1610 81.8
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2620.9 1609 81.4
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2609.7 1622 80.8
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2608.6 1619 80.5
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2600.1 1610 81.6
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2592.4 1611 80.9
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2589.3 1608 80.2
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2585.1 1602 80.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2573.5 1606 81.2
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2554.6 1602 79.8
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2554.2 1612 79.2
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2536.9 1598 78.8
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2536.5 1596 80.2
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2532.7 1592 79.8
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2532.3 1610 78.3
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2526.5 1663 77.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2523.8 1617 78.2
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2516.1 1615 78.1
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2515.7 1501 83.9
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2503.8 1612 77.2
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2502.6 1594 78.6
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2493.0 1590 78.3
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2491.8 1615 77.2
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2490.3 1599 77.8
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2489.1 1612 77.5
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2484.9 1612 77.0
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2484.1 1580 78.6
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2478.0 1606 77.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2474.9 1636 76.0
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2466.8 1633 75.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2457.2 1622 76.2
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2450.2 1602 76.6
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2431.4 1649 75.9
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2422.5 1921 66.9
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2417.1 1608 75.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2416.0 1608 76.3
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2410.6 1609 74.6
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2408.3 1593 76.8
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2405.2 1604 76.0
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2397.1 1597 74.4
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2384.0 1612 74.9
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2374.4 1616 73.9
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2372.8 1626 73.9
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2372.0 1444 82.2
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2365.5 1619 73.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2363.6 1615 73.7
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2358.2 1623 74.1
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2352.4 1596 74.2
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2345.5 1625 73.2
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2341.2 1620 73.3
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2340.8 1614 73.0
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2337.4 1504 77.8
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2331.2 1548 76.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2320.0 1588 72.9
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2309.6 1414 80.6
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2297.7 1602 72.3
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2293.8 1615 72.4
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2293.8 1615 72.6
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2264.2 1622 71.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2262.6 1618 71.4
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2260.7 1622 71.2
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2246.9 1620 70.9
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2241.8 1617 70.5
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2237.2 1623 70.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2236.1 1621 70.2
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2233.0 1406 80.9
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2228.0 1378 81.9
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2223.0 1618 70.5
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2219.5 1616 70.6
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2199.9 1625 70.4
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2182.1 1950 59.9
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2167.5 1597 69.4
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2158.6 1595 68.8
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2140.2 1462 73.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2103.6 1606 67.6
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2103.2 1602 66.4
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2074.7 1597 67.6
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2064.3 1578 67.0
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2055.8 1622 66.5
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 2008.0 1195 83.8
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1910.6 1562 66.3
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1818.5 1217 77.2
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1796.9 1409 68.3
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1736.9 1099 78.6
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1672.9 1372 66.3
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1631.7 977 83.8
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1582.8 969 82.2
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1466.1 1625 49.8
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1449.1 1206 60.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1420.2 1611 49.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1365.1 1590 47.8
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1306.2 1076 63.2
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1256.9 1600 47.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1223.4 732 82.7
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 4.7e-305 1052.0 644 82.1
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 3.1e-280 969.5 625 77.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 4.6e-268 929.1 581 79.9
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.9e-262 909.1 600 77.3
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.5e-260 902.9 589 77.9
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.5e-255 887.5 601 74.7
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-245 854.4 534 79.4
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.3e-235 820.5 501 81.2
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 2.5e-229 800.4 657 63.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 9.0e-224 781.9 558 72.6
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 3.1e-216 756.9 522 72.8
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 2.6e-207 727.2 513 73.3
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 4.5e-207 726.5 515 72.2
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 5.1e-203 713.0 639 59.5
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 2.4e-200 704.1 412 86.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 1.2e-186 658.7 476 70.6
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.3e-185 655.2 552 65.6
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.8e-172 610.9 481 62.2
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 1.3e-153 548.9 333 80.5
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 5.4e-152 543.5 360 77.8
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.8e-147 528.5 325 82.2
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.7e-137 495.4 292 87.7
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.8e-132 478.0 324 77.8
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 9.0e-123 446.4 387 61.5
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.7e-121 442.2 318 73.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.9e-119 433.3 368 60.3
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.5e-117 429.1 399 56.1
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.6e-114 416.8 316 71.5
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 7.9e-111 406.8 248 81.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 7.7e-98 363.6 250 71.2
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.3e-76 293.1 211 70.6
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.7e-76 291.6 161 89.4
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 1.8e-75 289.3 161 85.7
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.2e-62 244.6 141 85.1
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 8.8e-62 243.8 142 79.6
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.6e-53 215.7 211 55.9
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 8.0e-47 194.1 146 67.1
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.5e-45 189.9 118 79.7
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.6e-42 179.9 101 86.1
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 3.3e-40 172.2 93 88.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 5.6e-40 171.4 129 70.5
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.3e-40 171.0 139 63.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.4e-38 166.8 100 77.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 2.3e-38 166.0 98 77.6
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.2e-35 155.6 155 57.4
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-35 155.2 155 57.4
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-35 155.2 155 57.4
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-35 155.2 155 57.4
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-35 155.2 155 57.4
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-35 155.2 155 57.4
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.4e-35 154.8 155 56.8
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 7.8e-34 151.0 155 56.1
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 6.8e-30 137.9 100 69.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.4e-27 129.4 142 53.5
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-27 128.6 142 53.5
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.3e-25 122.9 84 66.7
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.5e-24 120.2 110 62.7
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.9e-24 119.8 94 62.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 3.3e-24 119.0 94 61.7
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 3.5e-18 99.0 74 60.8
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 9.6e-16 90.9 51 78.4
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.8e-15 88.6 82 58.5
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.6e-13 82.8 56 71.4
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 2.6e-13 82.8 50 74.0
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.7e-12 80.1 55 70.9
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 3.8e-12 79.0 54 70.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-12 79.0 54 68.5
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 2.4e-11 76.3 173 38.2
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.0e-09 70.9 54 64.8
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 4.0e-06 58.9 70 47.1


User provided reference genes

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