Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 9.9e-118 426.8 213 100.0
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 3.3e-113 411.8 213 96.7
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 1.5e-102 376.3 205 90.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.9e-101 372.1 213 87.8
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.5e-99 365.2 209 86.6
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.3e-96 356.7 210 83.8
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 6.9e-95 350.9 205 83.9
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 2.2e-93 345.9 205 82.9
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 2.9e-93 345.5 210 82.4
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 8.4e-93 344.0 209 82.3
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.2e-91 340.1 209 82.3
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.1e-91 339.3 210 81.0
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 3.5e-91 338.6 209 78.9
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.0e-90 337.0 209 78.9
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.0e-90 337.0 205 79.0
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.3e-90 336.7 205 78.5
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 5.1e-90 334.7 210 81.0
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 6.7e-90 334.3 209 77.5
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.5e-89 332.4 209 78.0
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.3e-89 332.0 209 78.0
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.6e-88 329.7 210 78.6
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 2.1e-88 329.3 211 79.6
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.1e-88 327.4 190 84.7
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 1.5e-86 323.2 209 75.6
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.0e-86 322.8 206 77.2
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 5.8e-86 321.2 227 70.0
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 5.8e-86 321.2 209 75.1
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 5.8e-86 321.2 209 76.1
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.4e-84 316.6 209 74.2
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 4.2e-84 315.1 210 79.5
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 4.2e-84 315.1 210 79.5
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 4.2e-84 315.1 210 79.5
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 5.5e-84 314.7 205 75.1
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 5.5e-84 314.7 209 72.2
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 5.5e-84 314.7 209 75.1
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 7.1e-84 314.3 181 85.1
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.6e-83 313.2 209 74.2
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 2.1e-83 312.8 210 79.0
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 3.5e-83 312.0 209 72.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 6.0e-83 311.2 193 78.2
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.5e-81 305.8 207 71.0
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.6e-80 303.1 209 69.9
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 2.1e-80 302.8 209 71.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 2.1e-80 302.8 209 70.3
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 3.7e-80 302.0 209 71.8
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 3.7e-80 302.0 209 70.3
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.1e-79 300.4 209 71.8
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.1e-79 300.4 209 71.8
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.1e-79 300.4 209 71.8
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 1.4e-79 300.1 205 72.2
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.8e-79 299.7 234 69.7
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 2.4e-79 299.3 209 71.3
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 4.1e-79 298.5 209 71.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 4.1e-79 298.5 209 70.8
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 4.1e-79 298.5 209 72.7
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 6.9e-79 297.7 209 71.8
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 9.0e-79 297.4 214 72.0
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 9.0e-79 297.4 209 69.4
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 2.0e-78 296.2 214 67.8
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.6e-78 295.8 209 68.4
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 3.4e-78 295.4 205 71.2
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.4e-78 295.4 210 71.4
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.4e-78 295.4 210 71.4
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.0e-77 293.9 200 70.0
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.0e-77 293.9 210 71.0
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 2.2e-77 292.7 205 70.7
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.2e-77 292.7 210 70.5
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 6.5e-77 291.2 203 76.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 8.4e-77 290.8 205 70.2
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.1e-76 290.4 203 71.9
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.4e-76 290.0 210 70.0
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 3.2e-76 288.9 205 69.8
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.2e-76 288.9 203 71.4
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 3.2e-76 288.9 215 67.0
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.2e-76 287.7 203 71.4
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 7.2e-76 287.7 210 67.6
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 7.2e-76 287.7 209 66.0
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.6e-75 286.6 211 67.3
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 2.1e-75 286.2 210 66.7
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 6.1e-75 284.6 210 73.3
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 7.9e-75 284.3 210 66.7
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.0e-74 283.9 206 68.0
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 3.0e-74 282.3 209 68.4
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 8.7e-74 280.8 209 66.0
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 8.7e-74 280.8 209 67.0
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.3e-72 276.9 196 69.4
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 2.2e-72 276.2 209 65.6
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 8.2e-72 274.2 209 65.6
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 8.2e-72 274.2 209 65.6
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.1e-71 273.9 185 70.3
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 2.4e-71 272.7 209 64.6
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 2.4e-71 272.7 209 66.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 3.1e-71 272.3 209 65.6
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 4.1e-71 271.9 209 65.1
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 6.9e-71 271.2 209 65.1
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 3.4e-70 268.9 155 84.5
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 3.4e-70 268.9 209 64.1
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 7.7e-70 267.7 209 64.6
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.3e-69 266.9 190 68.9
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 2.2e-69 266.2 205 63.9
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 2.2e-69 266.2 209 64.1
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.1e-68 263.8 205 63.9
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 1.9e-68 263.1 205 61.0
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 2.5e-68 262.7 213 63.8
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 7.2e-68 261.2 190 68.9
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 1.7e-64 250.0 211 57.8
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 2.8e-64 249.2 180 66.1
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.0e-62 243.0 214 62.1
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 9.7e-57 224.2 145 72.4
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 3.5e-54 215.7 167 58.1
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.0e-50 202.6 133 79.7
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 7.0e-47 191.4 200 51.0
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 7.0e-47 191.4 209 52.6
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.0e-41 173.3 113 72.6
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.7e-32 143.7 169 40.8
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 7.0e-31 138.3 176 43.2
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 2.3e-29 133.3 79 78.5
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 5.0e-29 132.1 183 43.2
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 4.0e-26 122.5 63 85.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 8.9e-26 121.3 114 49.1
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 9.8e-25 117.9 116 54.3
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 1.2e-17 94.4 193 35.2
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 2.0e-17 93.6 50 82.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 4.4e-17 92.4 71 64.8
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.7e-16 90.5 87 60.9
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 5.0e-13 79.0 59 64.4
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 2.1e-11 73.6 55 65.5
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 2.3e-10 70.1 83 47.0
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 5.2e-10 68.9 152 34.2
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 5.2e-10 68.9 78 46.2
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 5.2e-10 68.9 47 74.5
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.7e-08 63.9 49 61.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 4.9e-08 62.4 40 75.0


User provided reference genes

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