Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 0.0e+00 1147.5 618 100.0
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 2.3e-111 407.1 401 62.6
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.6e-43 181.8 751 30.4
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 1.2e-38 165.6 180 61.7
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 3.5e-30 137.5 864 26.3
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 4.5e-30 137.1 790 26.1
Dinv00549 Davidia involucrata HOM05D016043 ORTHO05D015789 3.2e-28 131.0 137 57.7
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.8e-24 117.9 773 25.5
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 1.4e-18 99.0 441 29.7
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 3.0e-18 97.8 460 28.0
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 6.3e-16 90.1 200 40.0
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 4.1e-15 87.4 453 28.9
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 5.0e-13 80.5 739 24.4
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 6.6e-13 80.1 842 23.8
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 8.6e-13 79.7 239 35.1
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 8.6e-13 79.7 453 29.1
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 2.5e-12 78.2 431 29.2
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 2.8e-11 74.7 668 22.9
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 3.6e-11 74.3 46 76.1
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 6.1e-11 73.6 279 30.8
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 1.4e-10 72.4 185 38.4
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 2.3e-10 71.6 618 23.3
CSS0001917 Camellia sinensis var. sinensis HOM05D016043 ORTHO05D015789 3.1e-10 71.2 201 35.3
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.1e-10 71.2 384 26.0
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.5e-09 68.9 752 25.3
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 1.5e-09 68.9 457 21.2
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 1.5e-09 68.9 462 25.5
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 1.5e-09 68.9 179 34.1
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 2.0e-09 68.6 47 68.1
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 3.4e-09 67.8 443 25.3
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 3.4e-09 67.8 403 23.8
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 5.8e-09 67.0 41 75.6
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 5.8e-09 67.0 212 33.5
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 7.5e-09 66.6 437 28.1
Dinv42169 Davidia involucrata HOM05D023276 ORTHO05D026395 1.7e-08 65.5 38 84.2
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.7e-08 65.5 384 25.5
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 2.2e-08 65.1 209 30.6
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 2.9e-08 64.7 42 71.4
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.9e-08 64.7 46 69.6
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 3.7e-08 64.3 41 75.6
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 3.7e-08 64.3 41 75.6
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 4.9e-08 63.9 44 65.9
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 4.9e-08 63.9 44 65.9
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 6.4e-08 63.5 106 38.7
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.1e-07 62.8 44 68.2
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 1.9e-07 62.0 65 47.7
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.9e-07 62.0 41 73.2
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.9e-07 62.0 42 69.0
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 2.4e-07 61.6 44 63.6
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 2.4e-07 61.6 44 63.6
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 4.1e-07 60.8 43 69.8
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 4.1e-07 60.8 65 52.3
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 4.1e-07 60.8 152 36.2
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 5.4e-07 60.5 39 71.8
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 7.0e-07 60.1 35 77.1
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 7.0e-07 60.1 47 63.8
Aqoxy6G00395 Aquilegia oxysepala HOM05D011323 ORTHO05D010674 9.2e-07 59.7 502 26.7
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 9.2e-07 59.7 182 31.3
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 9.2e-07 59.7 52 57.7
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 9.2e-07 59.7 52 57.7
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 9.2e-07 59.7 157 33.8
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 1.2e-06 59.3 41 68.3
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 1.2e-06 59.3 78 44.9
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 1.6e-06 58.9 67 46.3
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.0e-06 58.5 521 25.3
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 2.0e-06 58.5 871 22.4
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 2.0e-06 58.5 246 28.5
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 2.0e-06 58.5 643 25.2
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 2.7e-06 58.2 213 34.7
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 3.5e-06 57.8 46 65.2
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 3.5e-06 57.8 38 71.1
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 3.5e-06 57.8 283 25.1
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 4.6e-06 57.4 36 72.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.6e-06 57.4 36 72.2
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 4.6e-06 57.4 302 25.5
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 6.0e-06 57.0 522 25.1
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 6.0e-06 57.0 49 61.2
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 7.8e-06 56.6 36 72.2


User provided reference genes

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