Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.3e-128 463.0 230 100.0
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 3.3e-50 202.6 120 81.7
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.1e-49 199.9 120 80.0
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 2.8e-49 199.5 109 87.2
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 3.6e-49 199.1 108 88.9
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 4.7e-49 198.7 108 88.0
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 8.0e-49 198.0 120 78.3
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 8.0e-49 198.0 108 87.0
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.8e-48 196.8 109 86.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 6.8e-48 194.9 179 62.0
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 8.9e-48 194.5 109 85.3
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 8.9e-48 194.5 108 85.2
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.5e-47 193.7 128 74.2
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.5e-47 193.7 120 77.5
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.0e-47 193.4 118 78.0
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.6e-47 193.0 108 85.2
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 2.6e-47 193.0 107 86.0
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 3.4e-47 192.6 107 86.0
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.4e-47 192.6 120 78.3
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.4e-47 192.2 109 83.5
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 5.8e-47 191.8 120 77.5
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 5.8e-47 191.8 108 87.0
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 9.8e-47 191.0 109 83.5
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.3e-46 190.7 124 74.2
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.3e-46 190.7 124 74.2
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.3e-46 190.7 100 91.0
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.3e-46 190.7 118 80.5
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.3e-46 190.7 118 80.5
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.7e-46 190.3 109 81.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.7e-46 190.3 104 88.5
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.7e-46 190.3 109 81.7
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 2.2e-46 189.9 114 82.5
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 2.2e-46 189.9 130 70.8
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.2e-46 189.9 109 82.6
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.2e-46 189.9 109 83.5
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.2e-46 189.9 109 81.7
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.9e-46 189.5 118 76.3
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.9e-46 189.5 106 86.8
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.9e-46 189.5 109 81.7
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 4.9e-46 188.7 135 71.1
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 4.9e-46 188.7 109 83.5
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 4.9e-46 188.7 109 80.7
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 4.9e-46 188.7 109 85.3
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 6.4e-46 188.3 110 81.8
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 6.4e-46 188.3 107 83.2
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 6.4e-46 188.3 112 80.4
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 6.4e-46 188.3 107 84.1
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 8.3e-46 188.0 109 81.7
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 8.3e-46 188.0 135 71.1
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 8.3e-46 188.0 121 76.9
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 8.3e-46 188.0 110 83.6
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 8.3e-46 188.0 106 84.9
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.1e-45 187.6 135 70.4
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.1e-45 187.6 144 67.4
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.1e-45 187.6 135 70.4
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.1e-45 187.6 135 70.4
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.1e-45 187.6 109 82.6
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.1e-45 187.6 108 82.4
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 1.1e-45 187.6 106 84.0
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.4e-45 187.2 146 67.8
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.4e-45 187.2 128 71.9
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.4e-45 187.2 114 78.1
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.9e-45 186.8 106 84.0
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.9e-45 186.8 114 78.9
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 2.4e-45 186.4 124 71.8
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 2.4e-45 186.4 118 76.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 3.2e-45 186.0 112 80.4
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 4.1e-45 185.7 106 84.0
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 4.1e-45 185.7 106 84.0
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 4.1e-45 185.7 106 84.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.1e-45 185.7 118 77.1
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 4.1e-45 185.7 118 77.1
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 5.4e-45 185.3 109 81.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 7.0e-45 184.9 140 70.0
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 7.0e-45 184.9 103 85.4
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.6e-44 183.7 109 81.7
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.6e-44 183.7 109 81.7
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 2.1e-44 183.3 109 80.7
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 2.1e-44 183.3 142 67.6
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 2.7e-44 183.0 106 80.2
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 2.7e-44 183.0 106 80.2
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.7e-44 183.0 106 82.1
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.7e-44 183.0 106 82.1
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.7e-44 183.0 109 78.0
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.7e-44 183.0 119 77.3
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.5e-44 182.6 109 82.6
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 3.5e-44 182.6 109 82.6
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.5e-44 182.6 138 66.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 4.6e-44 182.2 123 71.5
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 6.0e-44 181.8 106 84.9
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.0e-43 181.0 107 82.2
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 1.3e-43 180.6 109 79.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.3e-43 180.6 107 80.4
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.3e-43 180.6 109 81.7
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.3e-43 180.6 109 77.1
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 3.0e-43 179.5 120 71.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 5.1e-43 178.7 106 79.2
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.1e-43 178.7 108 81.5
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 8.6e-43 177.9 106 80.2
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.1e-42 177.6 106 81.1
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 2.5e-42 176.4 106 81.1
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 2.5e-42 176.4 106 79.2
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 2.5e-42 176.4 106 79.2
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 2.5e-42 176.4 106 79.2
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.5e-42 176.4 106 82.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 4.3e-42 175.6 120 70.8
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.3e-42 175.6 120 70.8
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.3e-42 175.6 106 78.3
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.3e-42 175.6 106 78.3
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 9.5e-42 174.5 114 73.7
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.7e-41 172.2 120 70.0
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 4.7e-41 172.2 118 72.9
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 6.2e-41 171.8 130 67.7
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 3.1e-40 169.5 130 65.4
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.1e-40 169.5 113 72.6
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 8.9e-40 167.9 106 77.4
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.5e-39 167.2 107 74.8
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 2.0e-39 166.8 120 69.2
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 2.0e-39 166.8 110 74.5
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.4e-37 159.8 151 57.0
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 7.1e-37 158.3 204 46.6
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.6e-35 151.4 167 50.9
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.1e-34 151.0 88 83.0
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.3e-34 149.1 113 69.0
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.2e-33 147.5 88 79.5
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.6e-33 147.1 82 87.8
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 3.6e-33 146.0 86 81.4
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.4e-32 144.1 90 74.4
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 9.9e-31 137.9 75 86.7
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.6e-28 130.6 96 62.5
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 4.6e-28 129.0 78 79.5
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 3.0e-27 126.3 104 62.5
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 3.0e-27 126.3 65 89.2
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 3.3e-26 122.9 93 64.5
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 1.9e-21 107.1 96 56.2
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-20 104.0 110 53.6
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 6.6e-19 98.6 85 60.0
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 1.1e-18 97.8 59 81.4
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 6.9e-16 88.6 56 78.6
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 2.0e-15 87.0 85 52.9
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 2.9e-14 83.2 92 50.0
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 4.9e-14 82.4 108 41.7
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 3.3e-10 69.7 109 40.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.3e-10 69.7 70 54.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 7.4e-10 68.6 48 72.9
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.8e-08 63.9 88 43.2
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 7.6e-07 58.5 47 55.3
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.0e-06 58.2 101 42.6
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 2.2e-06 57.0 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 2.2e-06 57.0 43 69.8


User provided reference genes

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