Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 4.9e-143 511.1 261 100.0
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 5.6e-99 364.8 231 81.8
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 8.4e-95 350.9 262 73.7
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.6e-93 346.7 257 73.5
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 3.7e-90 335.5 258 70.5
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.5e-85 318.9 270 63.7
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.5e-80 303.5 301 59.5
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.4e-78 297.0 255 64.7
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.4e-78 297.0 254 64.2
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.9e-78 296.6 223 70.4
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 1.8e-76 290.0 260 59.6
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 5.1e-76 288.5 259 59.5
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 5.1e-76 288.5 258 62.4
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.1e-75 287.3 255 63.5
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 2.0e-75 286.6 265 58.5
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.3e-74 283.9 255 62.0
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 1.7e-74 283.5 254 63.0
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 8.2e-74 281.2 256 59.8
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.1e-73 280.8 254 62.2
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 3.1e-73 279.3 252 61.1
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 6.9e-73 278.1 261 58.2
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.2e-72 277.3 261 59.8
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.4e-72 275.8 255 61.6
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.0e-71 274.2 259 57.5
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 2.2e-71 273.1 256 60.5
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 6.5e-71 271.6 256 59.0
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.4e-70 270.4 248 59.7
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.9e-70 270.0 268 55.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 3.2e-70 269.2 261 59.0
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 3.2e-70 269.2 263 58.6
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 4.2e-70 268.9 254 61.4
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-69 266.9 262 55.3
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 1.6e-69 266.9 257 60.3
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 2.7e-69 266.2 247 60.7
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 6.1e-69 265.0 276 53.3
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 2.3e-68 263.1 256 58.2
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.0e-68 262.7 251 59.4
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 6.7e-68 261.5 269 56.5
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.5e-67 260.4 261 58.6
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 2.0e-67 260.0 270 56.7
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 9.7e-67 257.7 266 56.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 2.2e-66 256.5 289 52.6
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 3.7e-66 255.8 225 64.0
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 3.7e-66 255.8 261 55.9
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.4e-65 253.8 258 57.0
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.1e-65 252.7 250 58.8
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 5.3e-65 251.9 268 54.9
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 1.2e-64 250.8 266 56.4
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.6e-64 250.4 254 55.1
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 2.0e-64 250.0 284 54.2
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 5.9e-64 248.4 250 55.6
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 2.2e-63 246.5 253 56.1
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.9e-63 246.1 265 56.6
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.9e-63 246.1 271 54.2
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.0e-63 245.4 275 53.5
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.5e-62 243.8 286 50.0
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 1.9e-62 243.4 260 55.4
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.5e-62 243.0 255 54.9
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 3.2e-62 242.7 261 56.7
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 9.4e-62 241.1 215 60.9
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.6e-61 240.4 259 54.8
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 2.1e-61 240.0 248 56.9
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.7e-61 239.6 257 54.5
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.6e-61 239.2 272 52.6
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.6e-61 239.2 248 56.9
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 4.7e-61 238.8 278 52.9
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 6.1e-61 238.4 260 53.1
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.0e-60 237.7 214 61.2
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.4e-60 237.3 281 52.3
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.8e-60 236.9 225 59.6
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 2.6e-59 233.0 250 53.2
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.8e-58 229.6 251 55.4
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 6.3e-58 228.4 265 52.1
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 3.5e-56 222.6 270 50.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 2.9e-55 219.5 263 55.1
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 2.9e-55 219.5 267 50.6
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.5e-54 217.2 220 56.8
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 4.2e-54 215.7 256 51.2
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.2e-54 215.7 240 54.6
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 7.2e-54 214.9 268 50.4
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.6e-53 213.8 253 50.6
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 3.0e-52 209.5 232 50.9
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 4.0e-52 209.1 226 52.2
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 5.2e-52 208.8 280 48.2
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 5.2e-52 208.8 245 49.4
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.5e-51 207.2 262 50.8
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 5.7e-51 205.3 228 51.3
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 7.5e-51 204.9 214 50.9
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 7.5e-51 204.9 276 44.9
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.7e-50 203.8 225 50.7
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.2e-50 203.4 260 48.5
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.8e-50 203.0 271 46.9
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 3.7e-50 202.6 227 49.8
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 6.3e-50 201.8 282 45.7
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-49 201.1 224 50.0
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.1e-49 199.1 264 48.5
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 7.0e-49 198.4 287 45.3
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 9.1e-49 198.0 305 44.3
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-48 197.6 272 46.0
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 1.6e-48 197.2 213 53.1
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 2.0e-48 196.8 225 49.3
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 7.7e-48 194.9 219 49.3
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.7e-47 193.7 256 46.1
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 2.2e-47 193.4 231 48.9
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 8.5e-47 191.4 258 47.7
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-46 190.7 278 43.9
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.5e-46 188.7 247 46.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 9.4e-46 188.0 238 47.9
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.6e-45 187.2 253 46.2
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 6.1e-45 185.3 248 48.4
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.4e-44 184.1 263 47.5
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.0e-44 183.0 110 75.5
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-43 181.0 245 46.1
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 1.2e-43 181.0 251 46.2
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 7.5e-43 178.3 245 46.5
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 1.7e-42 177.2 247 45.3
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.2e-42 176.8 257 45.1
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.1e-41 174.5 253 45.8
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 4.1e-41 172.6 110 71.8
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-40 170.6 245 43.7
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.5e-40 169.5 104 75.0
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 4.5e-40 169.1 251 45.0
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 1.1e-38 164.5 148 56.8
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 2.5e-38 163.3 258 42.6
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.3e-38 162.9 249 43.4
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 1.6e-37 160.6 253 43.1
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 4.7e-37 159.1 254 42.5
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 5.2e-36 155.6 117 60.7
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 5.2e-36 155.6 260 40.8
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 5.4e-33 145.6 230 40.4
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.5e-30 137.5 131 52.7
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-30 137.1 101 62.4
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 2.5e-30 136.7 241 39.8
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 7.3e-30 135.2 251 39.0
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 4.7e-29 132.5 284 34.9
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 8.9e-28 128.3 166 43.4
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 3.4e-27 126.3 162 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 5.8e-27 125.6 272 31.2
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 9.8e-27 124.8 261 36.8
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-25 120.9 230 38.7
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.0e-24 117.1 124 50.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.0e-23 113.2 151 44.4
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 3.9e-23 112.8 165 40.6
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 7.3e-22 108.6 108 56.5
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 2.1e-21 107.1 145 43.4
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 3.6e-21 106.3 167 39.5
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 4.7e-21 105.9 150 42.0
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 6.8e-20 102.1 288 30.6
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 3.4e-19 99.8 176 41.5
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.8e-19 98.2 71 66.2
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 4.9e-18 95.9 167 37.7
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.1e-12 76.6 115 40.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 5.8e-11 72.4 85 56.5
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.3e-10 71.2 43 76.7
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 4.9e-10 69.3 77 58.4
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 8.4e-10 68.6 335 25.4
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 3.5e-08 63.2 81 43.2


User provided reference genes

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