Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 4.0e-100 368.2 204 100.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.9e-81 306.2 204 77.5
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.6e-80 303.1 201 75.1
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.9e-78 296.2 206 74.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 5.6e-78 294.7 203 75.4
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 6.2e-77 291.2 201 73.1
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.1e-76 290.4 208 76.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.4e-76 290.0 205 74.6
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.5e-75 286.6 202 72.3
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 2.6e-75 285.8 204 73.5
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 5.8e-75 284.6 206 72.3
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.9e-74 282.3 203 70.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.8e-74 282.0 201 74.6
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.1e-73 280.4 204 77.0
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 7.1e-73 277.7 201 68.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.1e-73 277.7 204 71.6
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.6e-72 276.6 207 69.1
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.1e-72 276.2 204 69.1
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.1e-72 276.2 204 66.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.7e-72 275.8 202 72.8
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 4.6e-72 275.0 194 77.8
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 6.0e-72 274.6 202 66.8
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.0e-71 273.9 196 71.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.3e-71 273.5 205 75.1
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-71 273.5 194 72.7
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 2.3e-71 272.7 203 67.0
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 5.1e-71 271.6 204 70.1
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 6.6e-71 271.2 204 68.6
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 6.6e-71 271.2 205 68.8
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.1e-70 270.4 201 67.7
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.1e-70 270.4 203 67.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-70 269.6 206 74.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.5e-70 269.2 203 71.9
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.3e-70 268.9 206 74.8
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-69 266.9 200 69.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.6e-69 266.5 208 70.7
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 2.1e-69 266.2 203 66.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.1e-69 266.2 206 71.4
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-69 266.2 206 73.3
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.8e-69 265.8 207 67.6
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 3.6e-69 265.4 207 66.2
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.2e-69 264.6 204 70.1
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 6.2e-69 264.6 207 66.7
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 6.2e-69 264.6 207 66.7
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 6.2e-69 264.6 207 64.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.1e-68 263.8 205 71.2
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 1.1e-68 263.8 194 68.0
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-68 263.1 206 71.8
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-68 263.1 204 65.7
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.8e-68 263.1 207 67.1
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 3.1e-68 262.3 207 65.7
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.3e-68 261.5 206 67.0
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 9.0e-68 260.8 168 78.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.0e-67 259.6 204 68.6
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.6e-67 259.2 211 69.7
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 5.8e-67 258.1 201 69.7
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.7e-66 256.5 205 63.9
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.2e-66 256.1 199 72.4
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 2.9e-66 255.8 206 67.5
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 3.8e-66 255.4 191 67.5
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 6.4e-66 254.6 204 68.1
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.1e-65 253.8 205 63.9
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.4e-65 252.7 204 69.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.2e-65 251.9 237 58.6
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 4.2e-65 251.9 205 65.9
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 7.1e-65 251.1 198 66.2
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 7.1e-65 251.1 210 67.1
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.3e-65 250.8 206 60.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.6e-64 250.0 208 64.9
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.6e-64 250.0 189 65.1
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.1e-64 249.6 206 60.7
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.7e-64 249.2 189 66.1
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 4.6e-64 248.4 208 61.1
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 4.6e-64 248.4 205 64.4
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 6.0e-64 248.1 206 64.6
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 7.9e-64 247.7 239 58.6
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 7.9e-64 247.7 205 68.3
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.7e-63 246.5 196 63.8
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.3e-63 246.1 138 89.9
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 3.0e-63 245.7 204 64.7
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 5.1e-63 245.0 200 60.5
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.1e-63 245.0 196 63.3
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.1e-62 243.8 206 63.1
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.5e-62 243.4 236 57.2
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.9e-62 243.0 208 61.5
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.9e-62 243.0 195 64.1
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 3.3e-62 242.3 202 62.4
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 3.3e-62 242.3 208 61.1
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.3e-62 242.3 202 71.8
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 4.3e-62 241.9 202 60.9
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.3e-62 241.9 209 60.8
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 7.4e-62 241.1 199 64.3
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 7.4e-62 241.1 236 56.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 9.6e-62 240.7 206 62.6
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 9.6e-62 240.7 207 64.3
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 9.6e-62 240.7 205 62.0
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.3e-61 240.4 210 64.8
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.1e-61 239.6 206 63.1
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 3.6e-61 238.8 206 61.7
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.8e-61 238.4 229 55.9
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.1e-60 237.3 151 80.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.8e-60 236.5 204 62.3
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.3e-60 235.0 202 61.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 5.3e-60 235.0 203 61.1
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 5.3e-60 235.0 203 61.1
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.9e-60 234.6 169 68.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 9.0e-60 234.2 206 59.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.5e-59 233.4 206 59.2
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.5e-59 233.4 206 59.2
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 4.9e-58 228.4 206 58.7
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 6.4e-58 228.0 206 57.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 6.4e-58 228.0 206 57.8
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 6.4e-58 228.0 203 62.6
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.4e-57 226.1 202 59.4
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.4e-57 226.1 201 59.2
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 5.5e-57 224.9 204 64.7
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.2e-56 223.8 206 64.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 4.6e-56 221.9 171 66.7
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.0e-55 220.7 206 61.7
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.1e-54 217.2 194 57.2
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.8e-52 209.9 200 58.5
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 3.1e-52 209.1 138 74.6
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.7e-48 196.1 199 52.3
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.1e-46 190.7 196 54.1
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.3e-45 187.2 152 63.8
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.6e-45 186.8 168 66.7
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.6e-45 186.8 134 67.2
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.2e-43 180.6 206 51.5
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.8e-42 175.6 123 69.1
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.4e-41 173.7 124 69.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.5e-41 172.9 192 55.2
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.2e-40 170.6 207 46.9
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.4e-33 144.4 131 61.1
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.6e-32 142.5 156 57.1
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.1e-30 137.5 84 77.4
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.1e-30 137.5 191 41.9
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 2.6e-30 136.3 196 37.8
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.7e-29 133.7 94 77.7
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.4e-28 129.8 116 56.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.1e-28 129.4 120 60.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.4e-27 125.9 120 60.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 5.9e-27 125.2 119 59.7
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.3e-26 124.0 147 50.3
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.9e-25 120.2 159 47.8
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 5.2e-23 112.1 117 52.1
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 5.2e-23 112.1 117 52.1
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 5.2e-23 112.1 117 52.1
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 3.6e-16 89.4 101 49.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.4e-15 87.4 100 48.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.0e-14 83.6 95 55.8
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.8e-12 77.0 194 29.9
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.1e-12 76.3 57 73.7
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 7.0e-12 75.1 203 28.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 4.5e-11 72.4 47 74.5
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 1.0e-07 61.2 115 37.4
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.5e-06 57.4 35 77.1
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 9.8e-06 54.7 160 27.5


User provided reference genes

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