Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25675 Davidia involucrata HOM05D002713 ORTHO05D008299 1.0e-76 290.0 153 100.0
vmacro18331 Vaccinium macrocarpon HOM05D002713 ORTHO05D008299 3.2e-62 241.9 154 85.1
Hma1.2p1_0279F.1_g112490 Hydrangea macrophylla HOM05D002713 ORTHO05D008299 7.2e-62 240.7 154 83.1
Rhsim08G0044300 Rhododendron simsii HOM05D002713 ORTHO05D008299 6.1e-61 237.7 154 84.4
Actinidia38212 Actinidia chinensis HOM05D002713 ORTHO05D008299 1.0e-60 236.9 154 83.1
Atru.chr6.2518 Acer truncatum HOM05D002713 ORTHO05D008299 2.6e-59 232.3 154 81.2
Thecc.05G115100 Theobroma cacao HOM05D002713 ORTHO05D008299 4.4e-59 231.5 154 78.6
Thecc.08G160500 Theobroma cacao HOM05D002713 ORTHO05D008299 4.4e-59 231.5 154 78.6
Duzib116G0203 Durio zibethinus HOM05D002713 ORTHO05D008299 9.7e-59 230.3 154 79.2
Gohir.A01G198200 Gossypium hirsutum HOM05D002713 ORTHO05D008299 9.7e-59 230.3 154 78.6
Gohir.D01G188400 Gossypium hirsutum HOM05D002713 ORTHO05D008299 9.7e-59 230.3 154 78.6
Gorai.002G231700 Gossypium raimondii HOM05D002713 ORTHO05D008299 2.8e-58 228.8 154 77.9
Aqoxy3G01481 Aquilegia oxysepala HOM05D002713 ORTHO05D008299 4.8e-58 228.0 154 78.6
TAR629G0668 Trochodendron aralioides HOM05D002713 ORTHO05D008299 6.3e-58 227.6 153 79.7
CSS0026460 Camellia sinensis var. sinensis HOM05D002713 ORTHO05D008299 1.1e-57 226.9 151 80.8
Eucgr.I01663 Eucalyptus grandis HOM05D002713 ORTHO05D008299 2.4e-57 225.7 154 79.2
MBI11_g06759_MAGBIO Magnolia biondii HOM05D002713 ORTHO05D008299 5.3e-57 224.6 151 79.5
Cpa.g.sc171.36 Carica papaya HOM05D002713 ORTHO05D008299 9.1e-57 223.8 154 76.6
Manes.15G158300 Manihot esculenta HOM05D002713 ORTHO05D008299 9.1e-57 223.8 154 76.0
PGR142G0173 Punica granatum HOM05D002713 ORTHO05D008299 2.0e-56 222.6 154 77.9
TWI56G0394 Tripterygium wilfordii HOM05D002713 ORTHO05D008299 2.0e-56 222.6 154 76.6
Ciclev10016267m.g Citrus clementina HOM05D002713 ORTHO05D008299 1.3e-55 219.9 154 75.3
Potri.001G333700 Populus trichocarpa HOM05D002713 ORTHO05D008299 3.8e-55 218.4 154 74.7
Sabra16G0215000 Salix brachista HOM05D002713 ORTHO05D008299 3.8e-55 218.4 154 74.0
THA.LOC104821118 Tarenaya hassleriana HOM05D002713 ORTHO05D008299 8.5e-55 217.2 154 74.7
Manes.17G105700 Manihot esculenta HOM05D002713 ORTHO05D008299 1.5e-54 216.5 154 73.4
EL10Ac5g11831 Beta vulgaris HOM05D002713 ORTHO05D008299 2.5e-54 215.7 154 73.4
CSS0019211 Camellia sinensis var. sinensis HOM05D002713 ORTHO05D008299 3.2e-54 215.3 148 78.4
AT3G01800 Arabidopsis thaliana HOM05D002713 ORTHO05D008299 4.2e-54 214.9 154 72.7
QL02p072006 Quercus lobata HOM05D002713 ORTHO05D008299 1.6e-53 213.0 153 75.2
Hund10839 Selenicereus undatus HOM05D002713 ORTHO05D008299 1.6e-53 213.0 154 74.7
AUR62030702 Chenopodium quinoa HOM05D002713 ORTHO05D008299 2.1e-53 212.6 154 73.4
AUR62036342 Chenopodium quinoa HOM05D002713 ORTHO05D008299 2.1e-53 212.6 154 73.4
Aa31LG5G10930 Aethionema arabicum HOM05D002713 ORTHO05D008299 8.0e-53 210.7 154 72.1
Sp3g00260 Schrenkiella parvula HOM05D002713 ORTHO05D008299 8.0e-53 210.7 151 73.5
arahy.Tifrunner.gnm1.ann1.HYDH72 Arachis hypogaea HOM05D002713 ORTHO05D008299 1.0e-52 210.3 154 72.1
arahy.Tifrunner.gnm1.ann1.Z26Q8L Arachis hypogaea HOM05D002713 ORTHO05D008299 1.0e-52 210.3 154 72.1
CiPaw.03G052800 Carya illinoinensis HOM05D002713 ORTHO05D008299 1.0e-52 210.3 154 74.0
MELO3C008210.2 Cucumis melo HOM05D002713 ORTHO05D008299 1.8e-52 209.5 154 70.8
BolC3t16208H Brassica oleracea HOM05D002713 ORTHO05D008299 2.3e-52 209.1 151 71.5
Carub.0003s0026 Capsella rubella HOM05D002713 ORTHO05D008299 2.3e-52 209.1 154 70.8
Glyma.13G194000 Glycine max HOM05D002713 ORTHO05D008299 2.3e-52 209.1 154 72.1
Haze_14839 Corylus avellana HOM05D002713 ORTHO05D008299 3.0e-52 208.8 154 74.7
Phvul.011G203500 Phaseolus vulgaris HOM05D002713 ORTHO05D008299 3.0e-52 208.8 154 71.4
A03p32340 Brassica napus HOM05D002713 ORTHO05D008299 4.0e-52 208.4 151 71.5
C03p39390 Brassica napus HOM05D002713 ORTHO05D008299 4.0e-52 208.4 151 71.5
Lj1g0012057 Lotus japonicus HOM05D002713 ORTHO05D008299 4.0e-52 208.4 154 72.1
Cfa007253 Carpinus fangiana HOM05D002713 ORTHO05D008299 5.2e-52 208.0 154 74.7
Medtr8g040070 Medicago truncatula HOM05D002713 ORTHO05D008299 6.8e-52 207.6 154 70.8
VMungo1127G0989 Vigna mungo HOM05D002713 ORTHO05D008299 6.8e-52 207.6 154 70.8
BraA03t12404Z Brassica rapa HOM05D002713 ORTHO05D008299 8.8e-52 207.2 151 70.9
ClCG11G006950 Citrullus lanatus HOM05D002713 ORTHO05D008299 8.8e-52 207.2 172 65.1
Thhalv10021359m.g Eutrema salsugineum HOM05D002713 ORTHO05D008299 8.8e-52 207.2 151 71.5
Nitab4.5_0003408g0100 Nicotiana tabacum HOM05D002713 ORTHO05D008299 8.8e-52 207.2 164 68.3
Psat6g103880 Pisum sativum HOM05D002713 ORTHO05D008299 1.5e-51 206.5 154 70.8
TPR.G22512 Trifolium pratense HOM05D002713 ORTHO05D008299 1.5e-51 206.5 152 71.1
CsaV3_6G001120 Cucumis sativus L. HOM05D002713 ORTHO05D008299 2.0e-51 206.1 154 69.5
Migut.K01448 Erythranthe guttata HOM05D002713 ORTHO05D008299 2.6e-51 205.7 164 68.3
MD17G1015000 Malus domestica HOM05D002713 ORTHO05D008299 2.6e-51 205.7 154 69.5
Sed0026658 Sechium edule HOM05D002713 ORTHO05D008299 2.6e-51 205.7 154 71.4
CANSAT64G1802 Cannabis sativa HOM05D002713 ORTHO05D008299 3.4e-51 205.3 151 70.9
CARHR075130 Cardamine hirsuta HOM05D002713 ORTHO05D008299 3.4e-51 205.3 154 71.4
Oeu035211.1 Olea europaea HOM05D002713 ORTHO05D008299 3.4e-51 205.3 164 68.3
Sopen11g003600 Solanum pennellii HOM05D002713 ORTHO05D008299 4.4e-51 204.9 164 67.1
PGSC0003DMG400027323 Solanum tuberosum HOM05D002713 ORTHO05D008299 7.5e-51 204.1 164 67.1
Solyc11g007740.2 Solanum lycopersicum HOM05D002713 ORTHO05D008299 9.8e-51 203.8 164 66.5
HanXRQChr09g0256061 Helianthus annuus HOM05D002713 ORTHO05D008299 1.3e-50 203.4 171 66.7
Prupe.3G302800 Prunus persica HOM05D002713 ORTHO05D008299 1.7e-50 203.0 151 70.2
Ca_02814_v3 Cicer arietinum L. HOM05D002713 ORTHO05D008299 2.2e-50 202.6 154 70.1
Lalb_Chr19g0133011 Lupinus albus HOM05D002713 ORTHO05D008299 2.2e-50 202.6 154 70.8
COL.COLO4_13738 Corchorus olitorius HOM05D002713 ORTHO05D008225 3.7e-50 201.8 128 84.4
Lju41C50T11 Lonicera japonica HOM05D002713 ORTHO05D008299 3.7e-50 201.8 164 69.5
RcHm_v2.0_Chr2g0174851 Rosa chinensis HOM05D002713 ORTHO05D008299 1.4e-49 199.9 154 68.8
Lsat_1_v5_gn_4_185421 Lactuca sativa HOM05D002713 ORTHO05D008299 1.8e-49 199.5 175 64.0
SGA_v2.0_scaffold31G12605 Striga asiatica HOM05D000200 ORTHO05D000262 4.1e-49 198.4 175 62.9
HPP92_021402 Vanilla planifolia HOM05D002713 ORTHO05D008299 7.0e-49 197.6 151 69.5
Os04g0490400 Oryza sativa ssp. japonica HOM05D002713 ORTHO05D008299 1.2e-48 196.8 151 69.5
FAN05G2106 Fragaria x ananassa HOM05D002713 ORTHO05D008299 2.0e-48 196.1 153 66.0
FAN09G4532 Fragaria x ananassa HOM05D002713 ORTHO05D008299 2.0e-48 196.1 153 66.7
FAN14G1042 Fragaria x ananassa HOM05D002713 ORTHO05D008299 2.0e-48 196.1 153 66.7
ECA232G0235 Erigeron canadensis HOM05D002713 ORTHO05D008299 1.3e-47 193.4 174 61.5
FAN14G1951 Fragaria x ananassa HOM05D002713 ORTHO05D008299 1.7e-47 193.0 150 66.7
Zm00001eb425520 Zea mays HOM05D002713 ORTHO05D008299 1.7e-47 193.0 151 66.9
Nitab4.5_0000593g0140 Nicotiana tabacum HOM05D002713 ORTHO05D008299 2.2e-47 192.6 162 65.4
FvH4_6g53070 Fragaria vesca HOM05D002713 ORTHO05D008299 5.0e-47 191.4 153 66.0
SalBow1G4882 Salvia bowleyana HOM05D002713 ORTHO05D008299 1.9e-46 189.5 174 62.1
SalBow7G4805 Salvia bowleyana HOM05D002713 ORTHO05D008299 1.9e-46 189.5 174 62.1
ATR0736G042 Amborella trichopoda HOM05D002713 ORTHO05D008299 3.2e-46 188.7 151 68.2
unitig_62.g23473 Utricularia gibba HOM05D002713 ORTHO05D008299 3.6e-45 185.3 164 61.0
CDE04G1068 Ceratophyllum demersum HOM05D002713 ORTHO05D008299 1.4e-44 183.3 150 66.7
SEGI_16540 Sequoiadendron giganteum HOM05D002713 ORTHO05D008299 1.8e-44 183.0 151 62.9
GSVIVG01001818001 Vitis vinifera HOM05D002713 ORTHO05D008299 8.8e-44 180.6 123 80.5
Peaxi162Scf00398g00722 Petunia axillaris HOM05D002713 ORTHO05D008299 1.1e-41 173.7 161 62.1
Cc07_g00600 Coffea canephora HOM05D002713 ORTHO05D008299 1.1e-38 163.7 106 83.0
DCAR_002952 Daucus carota HOM05D002713 ORTHO05D008299 1.2e-35 153.7 164 56.1
AL3G10330 Arabidopsis lyrata HOM05D002713 ORTHO05D008299 9.8e-35 150.6 154 56.5
AagrBONN_evm.TU.Sc2ySwM_369.319 Anthoceros agrestis HOM05D002713 ORTHO05D008299 2.9e-34 149.1 150 53.3
PSO782G5011 Papaver somniferum HOM05D002713 ORTHO05D008299 2.4e-33 146.0 128 57.8
Nn8g40995 Nelumbo nucifera HOM05D002713 ORTHO05D008299 4.1e-33 145.2 106 74.5
MSTRG.872 Avicennia marina HOM05D002713 ORTHO05D008299 7.0e-33 144.4 106 71.7
PSO063G5562 Papaver somniferum HOM05D002713 ORTHO05D008299 1.6e-32 143.3 128 57.0
HPP92_027105 Vanilla planifolia HOM05D002713 ORTHO05D008299 5.0e-31 138.3 130 63.8
Pp3c24_18680 Physcomitrium patens HOM05D002713 ORTHO05D008299 1.4e-28 130.2 150 48.7
Psat5g082120 Pisum sativum HOM05D002713 ORTHO05D008299 1.8e-28 129.8 114 63.2
HPP92_021444 Vanilla planifolia HOM05D002713 ORTHO05D008299 6.8e-28 127.9 164 51.8
Actinidia30890 Actinidia chinensis HOM05D002713 ORTHO05D008299 4.6e-24 115.2 75 81.3
Hma1.2p1_0279F.1_g112480 Hydrangea macrophylla HOM05D002713 ORTHO05D008299 1.0e-23 114.0 74 81.1
Dinv33361 Davidia involucrata HOM05D002713 ORTHO05D008299 1.7e-23 113.2 74 79.7
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 8.6e-23 110.9 79 73.4
SHI03902 Sapria himalayana HOM05D002713 ORTHO05D008299 2.5e-22 109.4 104 59.6
CBR_g6325 Chara braunii HOM05D002713 ORTHO05D008299 4.7e-21 105.1 155 41.3
Sc03g0006780 Simmondsia chinensis HOM05D002713 ORTHO05D008299 8.1e-21 104.4 74 75.7
PRCOL_00003660 Prasinoderma coloniale HOM05D002713 ORTHO05D008299 1.1e-17 94.0 152 38.8
MCO11G254 Micromonas commoda HOM05D002713 ORTHO05D008299 3.2e-17 92.4 150 36.7
Glyma.15G232300 Glycine max HOM05D002713 ORTHO05D008299 7.1e-17 91.3 73 64.4
C04p30040 Brassica napus HOM05D002713 ORTHO05D007644 2.1e-16 89.7 152 37.5
ECA236G3541 Erigeron canadensis HOM05D000015 ORTHO05D187672 7.8e-16 87.8 161 37.3
MSTRG.21556 Avicennia marina HOM05D002713 ORTHO05D007644 1.7e-15 86.7 152 34.9
MD03G1263900 Malus domestica HOM05D002713 ORTHO05D007644 2.3e-15 86.3 152 37.5
MD11G1284600 Malus domestica HOM05D002713 ORTHO05D007644 2.3e-15 86.3 152 37.5
Potri.002G052400 Populus trichocarpa HOM05D002713 ORTHO05D007644 2.3e-15 86.3 152 38.2
Prupe.8G240300 Prunus persica HOM05D002713 ORTHO05D007644 2.3e-15 86.3 153 39.9
BolC4t24536H Brassica oleracea HOM05D002713 ORTHO05D007644 3.9e-15 85.5 150 36.7
Sp5g00340 Schrenkiella parvula HOM05D002713 ORTHO05D007644 3.9e-15 85.5 152 35.5
TAR365G0978 Trochodendron aralioides HOM05D002713 ORTHO05D007644 3.9e-15 85.5 152 34.2
VMungo0720G0846 Vigna mungo HOM05D002713 ORTHO05D007644 3.9e-15 85.5 152 36.8
BcaC07g40796 Brassica carinata HOM05D002713 ORTHO05D007644 6.6e-15 84.7 152 34.9
AUR62004807 Chenopodium quinoa HOM05D002713 ORTHO05D007644 6.6e-15 84.7 152 34.9
AUR62036023 Chenopodium quinoa HOM05D002713 ORTHO05D007644 6.6e-15 84.7 154 34.4
MCO01G389 Micromonas commoda HOM05D002713 ORTHO05D007644 8.6e-15 84.3 150 36.7
Phvul.007G172400 Phaseolus vulgaris HOM05D002713 ORTHO05D007644 8.6e-15 84.3 152 36.2
BraA09t40907Z Brassica rapa HOM05D002713 ORTHO05D007644 1.1e-14 84.0 150 35.3
Lj5g0007002 Lotus japonicus HOM05D002713 ORTHO05D007644 1.1e-14 84.0 152 36.8
Lalb_Chr02g0142741 Lupinus albus HOM05D002713 ORTHO05D007644 1.1e-14 84.0 152 35.5
EL10Ac4g08965 Beta vulgaris HOM05D002713 ORTHO05D007644 1.9e-14 83.2 152 34.9
Eucgr.H01473 Eucalyptus grandis HOM05D002713 ORTHO05D007644 2.5e-14 82.8 152 34.2
Aa31LG10G17020 Aethionema arabicum HOM05D002713 ORTHO05D007644 3.3e-14 82.4 152 35.5
Ah.06g191750 Amaranthus hybridus HOM05D002713 ORTHO05D007644 3.3e-14 82.4 152 34.2
THA.LOC104817555 Tarenaya hassleriana HOM05D002713 ORTHO05D007644 3.3e-14 82.4 152 34.9
Actinidia24897 Actinidia chinensis HOM05D002713 ORTHO05D007644 4.3e-14 82.0 156 33.3
HPP92_000817 Vanilla planifolia HOM05D002713 ORTHO05D007644 4.3e-14 82.0 152 36.2
A09p54980 Brassica napus HOM05D002713 ORTHO05D007644 5.6e-14 81.6 152 35.5
SEGI_25463 Sequoiadendron giganteum HOM05D002713 ORTHO05D007644 5.6e-14 81.6 152 36.2
Medtr1g072170 Medicago truncatula HOM05D002713 ORTHO05D007644 7.3e-14 81.3 152 34.2
ATR0332G009 Amborella trichopoda HOM05D002713 ORTHO05D007644 1.2e-13 80.5 152 34.2
A04p00220 Brassica napus HOM05D002713 ORTHO05D007644 1.6e-13 80.1 150 35.3
BraA04t15741Z Brassica rapa HOM05D002713 ORTHO05D007644 1.6e-13 80.1 150 35.3
Lalb_Chr21g0306441 Lupinus albus HOM05D002713 ORTHO05D007644 1.6e-13 80.1 152 35.5
Glyma.10G026900 Glycine max HOM05D002713 ORTHO05D007644 2.1e-13 79.7 152 34.9
Ah.04g163050 Amaranthus hybridus HOM05D002713 ORTHO05D007644 3.6e-13 79.0 152 32.2
Rhsim01G0274400 Rhododendron simsii HOM05D002713 ORTHO05D007644 6.2e-13 78.2 150 32.7
AagrBONN_evm.TU.Sc2ySwM_368.1162 Anthoceros agrestis HOM05D002713 ORTHO05D007644 1.8e-12 76.6 153 34.0
SMO353G0086 Selaginella moellendorffii HOM05D002713 ORTHO05D007644 3.1e-12 75.9 150 34.7
CDE05G1433 Ceratophyllum demersum HOM05D002713 ORTHO05D007644 3.4e-11 72.4 149 32.2
Mapoly0032s0090 Marchantia polymorpha HOM05D002713 ORTHO05D007644 4.4e-11 72.0 153 30.1
Haze_04702 Corylus avellana HOM05D002713 ORTHO05D007644 5.8e-11 71.6 164 32.9
Cre03.g156050 Chlamydomonas reinhardtii HOM05D002713 ORTHO05D007644 1.3e-10 70.5 106 37.7
Carub.0005s2986 Capsella rubella HOM05D002713 ORTHO05D007644 2.2e-10 69.7 111 40.5
Glyma.02G147000 Glycine max HOM05D002713 ORTHO05D007644 3.8e-10 68.9 150 33.3
AL5G46030 Arabidopsis lyrata HOM05D002713 ORTHO05D007644 4.9e-10 68.6 111 39.6
AT3G63190 Arabidopsis thaliana HOM05D002713 ORTHO05D007644 1.1e-09 67.4 111 38.7
CARHR291760 Cardamine hirsuta HOM05D002713 ORTHO05D007644 1.4e-09 67.0 111 38.7
Thhalv10006162m.g Eutrema salsugineum HOM05D002713 ORTHO05D007644 1.9e-09 66.6 131 35.1
Psat5g081960 Pisum sativum HOM05D002713 ORTHO05D008299 1.9e-09 66.6 42 78.6
Mapoly0029s0063 Marchantia polymorpha HOM05D002713 ORTHO05D008299 5.4e-09 65.1 73 47.9
Cre12.g545177 Chlamydomonas reinhardtii HOM05D002713 ORTHO05D008299 7.1e-09 64.7 158 28.5
MD09G1014900 Malus domestica HOM05D002713 ORTHO05D008299 7.1e-09 64.7 50 62.0
MD09G1015000 Malus domestica HOM05D002713 ORTHO05D008299 2.3e-07 59.7 37 78.4


User provided reference genes

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