Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 5.3e-254 880.6 452 100.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.8e-138 495.4 467 61.9
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.5e-128 463.8 459 58.2
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.6e-123 446.4 457 58.6
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 6.3e-122 441.8 445 56.6
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.8e-119 432.6 465 52.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 9.4e-118 427.9 456 53.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 7.0e-105 385.2 452 52.7
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 7.0e-105 385.2 455 53.0
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 7.0e-105 385.2 464 53.0
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.9e-104 382.1 465 50.5
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.8e-103 379.4 457 53.2
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 5.5e-102 375.6 442 51.6
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 5.5e-102 375.6 465 51.2
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.7e-101 372.5 512 47.9
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 5.2e-100 369.0 461 49.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.8e-100 368.6 464 48.5
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 4.4e-99 365.9 443 50.1
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 5.7e-99 365.5 462 48.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 9.8e-99 364.8 454 49.1
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.3e-98 364.4 450 50.7
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 4.8e-98 362.5 463 48.6
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 6.3e-98 362.1 444 47.7
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.8e-97 360.5 457 48.6
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 7.7e-96 355.1 461 47.9
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.0e-95 354.8 454 48.7
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 2.3e-95 353.6 454 45.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 1.9e-94 350.5 451 46.6
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.5e-94 350.1 451 47.0
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 3.3e-94 349.7 468 49.4
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.2e-93 347.8 452 45.6
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 8.9e-92 341.7 460 45.9
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 2.8e-90 336.7 444 46.8
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 1.1e-89 334.7 459 45.8
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.1e-89 333.2 463 47.7
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 3.5e-88 329.7 467 45.0
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 5.9e-88 328.9 455 45.5
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-87 328.2 464 47.2
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.3e-87 327.0 462 47.4
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.9e-86 323.9 461 43.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 7.3e-86 322.0 455 45.5
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.2e-83 314.7 456 44.5
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-83 313.9 456 46.1
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 5.8e-83 312.4 396 51.3
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 7.5e-83 312.0 457 45.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.9e-82 310.1 449 45.7
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.4e-82 308.9 474 44.5
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 2.4e-81 307.0 491 42.6
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.2e-81 306.6 506 41.9
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 9.2e-81 305.1 446 45.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-79 301.2 456 43.2
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 5.6e-78 295.8 458 43.4
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.8e-77 293.5 480 42.9
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.6e-77 293.1 456 42.1
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 3.6e-77 293.1 446 44.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 9.8e-75 285.0 465 43.0
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.1e-73 281.6 459 42.3
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.9e-73 280.8 448 43.5
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.9e-73 280.8 449 44.5
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.1e-72 277.3 459 42.0
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.7e-72 276.9 464 41.6
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.3e-71 274.6 456 41.4
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-71 274.2 452 41.4
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 2.3e-71 273.9 452 42.0
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 3.0e-71 273.5 452 42.3
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.5e-70 271.2 450 41.6
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.9e-70 270.8 453 41.3
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.5e-70 270.4 454 41.2
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.3e-70 269.6 432 41.0
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 9.5e-70 268.5 454 41.9
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.6e-69 267.7 452 40.9
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 3.6e-69 266.5 462 40.5
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 3.6e-69 266.5 446 42.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.2e-69 265.8 463 40.2
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.8e-68 264.2 473 38.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.2e-68 262.7 446 39.9
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.2e-67 261.5 455 41.8
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.5e-67 261.2 459 42.7
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.6e-67 260.4 448 42.2
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.6e-67 260.4 339 45.7
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 3.4e-67 260.0 454 41.2
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 4.4e-67 259.6 449 42.1
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.5e-67 258.8 391 42.2
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.9e-66 256.1 456 41.9
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 6.4e-66 255.8 446 40.4
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.4e-65 254.6 449 39.2
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.9e-65 254.2 447 41.4
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.4e-65 253.8 561 36.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.4e-65 252.7 446 41.3
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.2e-64 251.5 475 40.8
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.6e-64 251.1 462 40.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.1e-64 250.8 465 39.4
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.1e-64 250.8 318 45.6
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.7e-64 250.4 456 42.3
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.5e-64 250.0 462 38.7
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 3.5e-64 250.0 450 41.6
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.0e-63 248.4 457 40.9
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.7e-63 247.7 454 39.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 5.1e-63 246.1 463 39.7
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.1e-62 245.0 451 40.1
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.5e-62 244.6 448 40.4
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.5e-62 243.8 470 39.8
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.5e-62 243.8 448 40.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 3.3e-62 243.4 453 39.5
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 5.6e-62 242.7 433 40.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.2e-61 241.5 452 39.4
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 8.1e-61 238.8 453 39.1
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.5e-59 234.6 445 37.3
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.4e-59 233.4 456 37.7
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.4e-59 233.0 465 38.5
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 9.9e-59 231.9 428 39.5
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.1e-57 228.4 452 38.7
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.1e-57 228.4 453 36.4
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.9e-57 227.6 449 37.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 5.4e-57 226.1 449 40.3
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.6e-56 224.6 452 36.7
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.7e-56 223.8 462 36.8
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.3e-55 220.7 459 37.9
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 4.3e-54 216.5 453 37.1
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 2.8e-53 213.8 461 35.6
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 8.1e-53 212.2 413 40.0
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 3.1e-52 210.3 448 37.5
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 4.0e-52 209.9 443 37.2
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 4.0e-52 209.9 464 36.2
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 5.8e-51 206.1 461 35.6
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.3e-50 204.9 448 35.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 4.9e-50 203.0 460 35.2
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 4.9e-50 203.0 460 35.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-49 200.3 452 35.0
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.1e-49 199.1 452 35.0
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.6e-48 198.0 452 35.2
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.0e-47 195.3 451 36.4
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.3e-47 194.1 376 39.6
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.0e-47 193.7 452 34.7
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 5.1e-47 193.0 455 34.3
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 8.7e-47 192.2 454 34.4
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.5e-46 191.4 452 34.3
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.6e-45 186.8 279 44.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 8.1e-45 185.7 467 35.3
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.4e-44 184.9 454 33.5
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 5.3e-44 183.0 471 34.2
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.0e-43 181.0 452 35.0
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 5.8e-43 179.5 459 34.4
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 6.4e-42 176.0 446 33.2
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.2e-41 173.3 448 33.3
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 9.6e-38 162.2 272 38.6
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 2.8e-37 160.6 451 32.8
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.4e-36 158.3 426 33.6
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.8e-36 157.9 462 34.6
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.9e-36 156.0 460 33.0
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 6.9e-36 156.0 457 31.5
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.5e-35 154.8 457 30.4
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 2.2e-34 151.0 466 34.1
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.2e-34 151.0 307 37.1
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.9e-34 150.6 462 35.1
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 4.9e-34 149.8 461 33.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.5e-33 147.5 453 33.6
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 3.2e-33 147.1 390 35.6
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 7.1e-33 146.0 473 34.0
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.0e-31 142.1 294 37.1
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.8e-31 141.4 407 34.6
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 3.3e-30 137.1 440 30.5
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.1e-29 134.4 464 31.9
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-27 128.3 394 32.5
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 4.5e-27 126.7 466 30.5
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 6.5e-26 122.9 372 33.1
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.4e-25 121.7 440 30.5
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.5e-25 120.9 97 63.9
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 9.0e-20 102.4 168 41.1
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.9e-19 99.8 196 38.3
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 2.5e-17 94.4 186 37.6
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.2e-16 92.0 305 29.5
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 3.9e-15 87.0 554 27.1
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 3.9e-15 87.0 164 43.3
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.4e-14 82.8 464 26.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 2.8e-13 80.9 210 33.8
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.8e-13 80.1 142 39.4
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 8.2e-13 79.3 470 25.3
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 9.1e-12 75.9 101 42.6
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 9.1e-12 75.9 141 39.7
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 9.1e-12 75.9 101 43.6
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-11 75.1 101 43.6
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 7.7e-11 72.8 204 31.4
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.0e-10 72.4 157 36.3
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 8.5e-10 69.3 192 32.3
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 1.4e-09 68.6 76 48.7


User provided reference genes

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