Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 2.2e-42 175.3 89 100.0
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 6.7e-36 153.7 88 83.0
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.5e-35 152.5 89 82.0
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.7e-34 149.1 88 80.7
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 4.8e-34 147.5 88 79.5
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 4.1e-33 144.4 89 79.8
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 2.0e-32 142.1 91 76.9
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 2.6e-32 141.7 89 76.4
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 7.7e-32 140.2 88 76.1
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 1.0e-31 139.8 89 74.2
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 1.3e-31 139.4 81 81.5
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.3e-31 139.4 81 81.5
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.3e-31 139.4 88 75.0
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.7e-31 139.0 81 82.7
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 1.7e-31 139.0 88 76.1
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.2e-31 138.7 88 75.0
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 2.2e-31 138.7 89 74.2
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 2.9e-31 138.3 88 76.1
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 2.9e-31 138.3 87 73.6
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 2.9e-31 138.3 87 77.0
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 2.9e-31 138.3 89 75.3
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.9e-31 138.3 88 77.3
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.9e-31 138.3 77 88.3
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 3.8e-31 137.9 88 76.1
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 3.8e-31 137.9 88 75.0
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 5.0e-31 137.5 86 76.7
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 6.5e-31 137.1 88 75.0
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 6.5e-31 137.1 88 76.1
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 6.5e-31 137.1 88 76.1
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 6.5e-31 137.1 88 76.1
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 8.5e-31 136.7 88 72.7
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.1e-30 136.3 88 75.0
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 1.1e-30 136.3 86 75.6
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 1.1e-30 136.3 88 75.0
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 1.1e-30 136.3 88 76.1
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 1.1e-30 136.3 88 73.9
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 1.1e-30 136.3 86 77.9
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.5e-30 136.0 88 75.0
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 1.5e-30 136.0 88 75.0
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 1.5e-30 136.0 88 73.9
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 1.5e-30 136.0 88 73.9
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 1.9e-30 135.6 88 73.9
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.9e-30 135.6 88 75.0
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 1.9e-30 135.6 88 73.9
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 1.9e-30 135.6 88 75.0
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 1.9e-30 135.6 88 75.0
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 2.5e-30 135.2 88 76.1
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 2.5e-30 135.2 88 73.9
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.5e-30 135.2 84 77.4
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 3.2e-30 134.8 86 75.6
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 3.2e-30 134.8 88 72.7
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 3.2e-30 134.8 88 75.0
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 4.2e-30 134.4 78 79.5
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 4.2e-30 134.4 77 81.8
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 4.2e-30 134.4 88 73.9
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 5.5e-30 134.0 88 73.9
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 5.5e-30 134.0 88 75.0
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 5.5e-30 134.0 88 73.9
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 7.2e-30 133.7 88 75.0
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 7.2e-30 133.7 88 73.9
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.2e-29 132.9 88 71.6
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.2e-29 132.9 88 71.6
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 1.2e-29 132.9 88 73.9
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 1.2e-29 132.9 88 75.0
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.6e-29 132.5 86 75.6
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 1.6e-29 132.5 88 72.7
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.6e-29 132.5 84 76.2
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 1.6e-29 132.5 89 73.0
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 2.1e-29 132.1 88 71.6
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 2.1e-29 132.1 89 73.0
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.1e-29 132.1 89 73.0
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.1e-29 132.1 89 73.0
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 2.1e-29 132.1 86 74.4
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 2.7e-29 131.7 89 71.9
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 3.6e-29 131.3 88 73.9
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 3.6e-29 131.3 84 76.2
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 4.7e-29 131.0 86 74.4
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 4.7e-29 131.0 86 75.6
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.0e-29 130.2 89 71.9
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.0e-29 130.2 89 71.9
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 8.0e-29 130.2 86 75.6
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 8.0e-29 130.2 88 71.6
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 1.0e-28 129.8 88 72.7
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.0e-28 129.8 84 73.8
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 1.4e-28 129.4 88 69.3
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 1.4e-28 129.4 88 70.5
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 1.8e-28 129.0 87 70.1
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 1.8e-28 129.0 86 72.1
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 2.3e-28 128.6 81 72.8
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.3e-28 128.6 81 72.8
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 2.3e-28 128.6 90 72.2
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 2.3e-28 128.6 86 70.9
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 3.0e-28 128.3 82 75.6
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 3.0e-28 128.3 82 75.6
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 3.0e-28 128.3 83 73.5
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 3.0e-28 128.3 86 72.1
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 3.0e-28 128.3 88 71.6
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.0e-28 127.9 88 70.5
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 5.2e-28 127.5 88 70.5
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 6.7e-28 127.1 82 70.7
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 6.7e-28 127.1 90 71.1
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 8.8e-28 126.7 88 70.5
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 8.8e-28 126.7 88 73.9
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 1.2e-27 126.3 87 71.3
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 1.5e-27 125.9 86 74.4
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 2.0e-27 125.6 89 66.3
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 2.0e-27 125.6 88 71.6
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 2.0e-27 125.6 88 71.6
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 2.6e-27 125.2 86 73.3
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 2.6e-27 125.2 82 74.4
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 3.3e-27 124.8 86 69.8
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 4.4e-27 124.4 86 72.1
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 4.4e-27 124.4 78 75.6
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 4.4e-27 124.4 86 70.9
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 5.7e-27 124.0 86 72.1
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 5.7e-27 124.0 86 72.1
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 7.5e-27 123.6 84 71.4
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 7.5e-27 123.6 84 71.4
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 7.5e-27 123.6 84 71.4
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 9.7e-27 123.2 86 69.8
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 1.3e-26 122.9 88 68.2
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 1.3e-26 122.9 88 68.2
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 1.7e-26 122.5 88 69.3
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 1.7e-26 122.5 88 69.3
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 2.2e-26 122.1 84 69.0
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 2.8e-26 121.7 88 68.2
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 3.7e-26 121.3 88 69.3
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 3.7e-26 121.3 86 70.9
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 4.8e-26 120.9 88 69.3
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 1.1e-25 119.8 84 70.2
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 1.4e-25 119.4 88 65.9
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.4e-25 118.6 85 69.4
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 2.4e-25 118.6 84 69.0
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 2.4e-25 118.6 84 69.0
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 2.4e-25 118.6 84 67.9
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 3.1e-25 118.2 88 68.2
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 3.1e-25 118.2 86 66.3
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 4.1e-25 117.9 88 64.8
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 4.1e-25 117.9 64 84.4
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 4.1e-25 117.9 86 64.0
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 9.1e-25 116.7 89 67.4
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 9.1e-25 116.7 82 70.7
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 9.1e-25 116.7 86 67.4
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 1.2e-24 116.3 67 82.1
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 2.0e-24 115.5 86 65.1
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 3.5e-24 114.8 86 66.3
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 4.5e-24 114.4 88 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 7.7e-24 113.6 84 63.1
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 7.7e-24 113.6 85 64.7
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 7.7e-24 113.6 88 62.5
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 1.3e-23 112.8 82 65.9
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 1.3e-23 112.8 86 64.0
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 2.9e-23 111.7 80 68.8
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 1.1e-22 109.8 83 63.9
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 1.1e-22 109.8 91 68.1
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 4.2e-22 107.8 84 63.1
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 5.5e-22 107.5 81 67.9
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 6.1e-21 104.0 69 72.5
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.7e-18 95.9 77 66.2
CBR_g18879 Chara braunii HOM05D004130 ORTHO05D004705 2.8e-18 95.1 82 59.8
Pp3c14_11470 Physcomitrium patens HOM05D004130 ORTHO05D004705 8.3e-18 93.6 84 57.1
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.6e-16 89.4 60 71.7
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 2.0e-16 89.0 77 57.1
Pp3c2_5450 Physcomitrium patens HOM05D004130 ORTHO05D004705 2.7e-16 88.6 84 54.8
PRCOL_00007032 Prasinoderma coloniale HOM05D004130 ORTHO05D004705 1.7e-15 85.9 84 47.6
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 3.3e-14 81.6 90 54.4
MCO11G819 Micromonas commoda HOM05D004130 ORTHO05D004705 1.2e-13 79.7 83 47.0
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 3.6e-13 78.2 88 51.1
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 3.6e-13 78.2 88 51.1
Cre02.g118850 Chlamydomonas reinhardtii HOM05D004130 ORTHO05D004705 4.7e-13 77.8 84 47.6
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 8.9e-12 73.6 43 79.1
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 8.9e-12 73.6 49 75.5
MBI05_g04121_MAGBIO Magnolia biondii HOM05D001811 ORTHO05D001738 1.5e-11 72.8 65 58.5
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 1.4e-09 66.2 41 78.0
Haze_27157 Corylus avellana HOM05D004130 ORTHO05D004705 1.4e-09 66.2 64 48.4
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 1.8e-09 65.9 41 78.0
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 3.5e-08 61.6 41 70.7
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 3.5e-08 61.6 41 70.7
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 7.8e-08 60.5 44 68.2
CBR_g39376 Chara braunii HOM05D001964 ORTHO05D001879 1.3e-07 59.7 51 49.0
Haze_27764 Corylus avellana HOM05D004130 ORTHO05D004705 2.3e-07 58.9 61 42.6
Pp3c11_3750 Physcomitrium patens HOM05D001964 ORTHO05D001879 7.3e-06 53.9 56 44.6
BNapus_Darmor_BZH_scaffold_114p00080 Brassica napus HOM05D001137 ORTHO05D001967 9.5e-06 53.5 78 38.5


User provided reference genes

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