Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-115 419.5 202 100.0
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 3.7e-90 335.1 184 82.1
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.4e-89 333.2 185 83.8
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.4e-89 333.2 185 83.8
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.4e-89 333.2 187 83.4
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 3.1e-89 332.0 184 81.5
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.1e-89 331.6 184 82.1
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.1e-89 331.6 184 82.1
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.6e-88 329.7 184 83.2
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.6e-88 329.7 184 82.6
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.0e-88 329.3 184 81.5
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.0e-88 329.3 184 81.5
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.7e-88 328.9 183 82.0
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 4.5e-88 328.2 186 79.6
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 1.3e-87 326.6 186 80.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 2.2e-87 325.9 184 77.7
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.5e-86 323.2 183 80.3
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.9e-86 322.8 184 80.4
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.9e-86 322.8 231 68.8
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.2e-85 320.1 200 75.5
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 2.1e-85 319.3 176 80.1
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-85 319.3 183 78.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 3.6e-85 318.5 184 79.3
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.6e-85 318.5 185 77.3
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 4.7e-85 318.2 184 78.3
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.0e-84 317.0 187 77.0
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.0e-84 317.0 187 77.0
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-84 316.6 183 78.1
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.4e-84 316.6 178 80.3
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.8e-84 316.2 184 77.2
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-84 316.2 183 78.1
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.8e-84 316.2 180 78.3
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 1.8e-84 316.2 184 78.8
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.3e-84 315.8 183 77.6
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.3e-84 315.8 181 82.3
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 3.0e-84 315.5 179 78.8
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 3.0e-84 315.5 184 77.2
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-84 315.1 183 77.6
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 4.0e-84 315.1 204 72.1
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 5.2e-84 314.7 183 78.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 5.2e-84 314.7 184 77.2
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 5.2e-84 314.7 184 77.2
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 6.8e-84 314.3 190 75.3
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 6.8e-84 314.3 179 82.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.2e-83 313.5 183 76.5
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.5e-83 313.2 184 77.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.0e-83 312.8 185 77.8
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.6e-83 312.4 184 77.2
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.7e-83 311.2 176 79.5
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 5.7e-83 311.2 176 79.5
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 5.7e-83 311.2 199 73.9
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 9.8e-83 310.5 181 79.6
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.2e-82 309.3 184 75.5
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 2.2e-82 309.3 179 82.1
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 3.7e-82 308.5 182 75.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 4.8e-82 308.1 178 77.5
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 4.8e-82 308.1 181 75.7
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.3e-82 307.8 184 76.1
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.1e-81 307.0 186 74.2
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.8e-81 306.2 184 76.1
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.8e-81 306.2 168 82.7
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.4e-81 305.8 187 74.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 3.1e-81 305.4 180 76.7
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 3.1e-81 305.4 180 78.9
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 4.1e-81 305.1 184 76.1
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 7.0e-81 304.3 184 75.0
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.2e-80 303.5 184 75.0
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.2e-80 303.5 184 75.0
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.6e-80 303.1 183 73.2
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-80 302.4 202 70.3
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.7e-80 302.4 205 70.7
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.5e-80 301.6 183 73.2
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.9e-80 301.2 183 73.2
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.7e-79 299.7 182 72.5
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.5e-78 296.6 156 84.6
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.9e-78 296.2 182 72.5
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.5e-78 294.7 175 74.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.6e-77 292.0 180 71.7
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 6.1e-77 291.2 180 71.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 6.1e-77 291.2 177 72.3
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 8.0e-77 290.8 180 72.2
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.0e-76 290.4 180 71.1
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.4e-76 290.0 180 71.7
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.8e-76 289.7 180 71.1
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.8e-76 289.7 177 71.8
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.8e-76 289.7 177 71.8
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.3e-76 289.3 204 65.2
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 4.0e-76 288.5 180 70.6
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 5.2e-76 288.1 180 70.0
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 6.8e-76 287.7 180 71.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 6.8e-76 287.7 177 70.6
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.6e-75 285.8 161 82.6
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.6e-75 285.8 178 72.5
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-74 283.5 225 60.0
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-74 283.1 225 59.6
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.7e-74 283.1 156 82.1
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 2.2e-74 282.7 158 82.3
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 7.0e-73 277.7 180 71.7
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.0e-73 277.7 201 67.2
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.2e-73 277.3 162 77.8
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.6e-72 276.6 188 68.6
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 5.9e-72 274.6 180 70.0
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 6.6e-71 271.2 181 67.4
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.5e-70 270.0 151 78.1
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 3.3e-70 268.9 157 77.7
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.2e-69 266.9 283 51.9
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 4.7e-69 265.0 159 74.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.0e-68 261.9 177 69.5
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.0e-68 261.9 177 69.5
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.5e-67 260.0 165 70.9
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.6e-67 259.2 184 63.6
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 7.5e-67 257.7 183 67.2
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.7e-66 256.5 146 80.8
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 6.4e-66 254.6 183 67.2
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.4e-65 253.4 225 57.3
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 4.1e-65 251.9 154 74.0
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 6.6e-63 244.6 186 66.1
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 4.3e-62 241.9 182 61.0
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 9.5e-62 240.7 139 77.0
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.6e-56 223.4 179 54.7
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 3.5e-56 222.2 187 57.8
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.9e-54 216.5 194 59.3
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 7.3e-54 214.5 141 68.1
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.9e-52 207.6 118 78.0
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 8.3e-50 201.1 184 54.9
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 9.2e-49 197.6 206 51.0
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.5e-48 195.7 172 48.3
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.5e-48 195.7 172 48.3
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.1e-44 184.1 202 45.5
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.4e-43 178.7 91 86.8
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.7e-42 176.8 185 56.2
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 1.6e-40 170.2 119 64.7
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.5e-38 163.7 203 37.4
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.6e-38 161.0 141 56.7
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.3e-37 160.6 161 50.3
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.8e-37 158.7 88 78.4
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 8.1e-37 157.9 178 40.4
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.4e-35 152.1 179 37.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 3.8e-34 149.1 142 45.8
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 7.1e-33 144.8 93 68.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-32 144.1 154 51.9
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 3.1e-28 129.4 93 61.3
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 4.8e-13 79.0 46 73.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 2.9e-10 69.7 44 70.5
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.3e-07 60.1 43 65.1


User provided reference genes

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