Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.9e-105 386.0 207 100.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 8.8e-55 217.6 223 61.4
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.4e-47 193.7 189 66.1
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 2.2e-37 159.8 152 61.8
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.9e-33 146.7 200 51.0
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.9e-33 146.7 205 50.7
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.6e-33 145.2 197 49.7
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.6e-32 142.5 80 87.5
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 4.7e-32 142.1 189 49.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.1e-31 141.0 213 47.9
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 8.9e-31 137.9 78 85.9
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.0e-30 136.7 210 50.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.6e-30 136.3 80 83.8
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 4.4e-30 135.6 80 82.5
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 5.8e-30 135.2 80 83.8
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.7e-29 133.7 80 83.8
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.2e-29 133.3 144 56.2
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.2e-29 133.3 79 83.5
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 2.9e-29 132.9 80 82.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 6.4e-29 131.7 80 81.2
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.1e-28 131.0 76 86.8
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.4e-28 129.8 131 59.5
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.2e-28 129.4 81 81.5
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.1e-28 129.0 75 81.3
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.1e-28 129.0 75 82.7
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 9.2e-28 127.9 80 78.8
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 9.2e-28 127.9 83 78.3
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.2e-27 127.5 78 79.5
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-27 127.5 82 80.5
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-27 127.5 82 80.5
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.2e-27 127.5 82 80.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.2e-27 127.5 78 84.6
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.2e-27 127.5 75 80.0
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.6e-27 127.1 75 82.7
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.6e-27 127.1 75 80.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.6e-27 127.1 75 81.3
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.1e-27 126.7 80 76.2
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.1e-27 126.7 80 82.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.1e-27 126.7 83 77.1
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.1e-27 126.7 83 77.1
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.1e-27 126.7 75 84.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.7e-27 126.3 204 47.5
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.7e-27 126.3 78 82.1
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.6e-27 125.6 81 79.0
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 7.8e-27 124.8 228 41.7
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 7.8e-27 124.8 79 79.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 7.8e-27 124.8 76 78.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.0e-26 124.4 78 82.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.7e-26 123.6 173 50.9
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.7e-26 123.6 80 75.0
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-26 123.6 81 79.0
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.7e-26 123.6 76 78.9
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.0e-26 122.9 83 75.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.9e-26 122.5 78 79.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.9e-26 122.5 71 83.1
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 5.1e-26 122.1 82 74.4
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 6.6e-26 121.7 80 77.5
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 6.6e-26 121.7 75 78.7
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 8.6e-26 121.3 75 76.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 8.6e-26 121.3 75 81.3
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.5e-25 120.6 78 79.5
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.9e-25 120.2 81 79.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 4.3e-25 119.0 79 73.4
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 5.6e-25 118.6 71 78.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.6e-25 118.6 80 77.5
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 5.6e-25 118.6 75 76.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 7.3e-25 118.2 71 77.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 7.3e-25 118.2 71 77.5
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 7.3e-25 118.2 71 77.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 7.3e-25 118.2 78 71.8
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.3e-25 118.2 81 71.6
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 7.3e-25 118.2 81 71.6
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 9.5e-25 117.9 75 77.3
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 9.5e-25 117.9 75 77.3
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.6e-24 117.1 92 66.3
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.6e-24 117.1 65 81.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.1e-24 116.7 81 74.1
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.1e-24 116.7 76 75.0
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.8e-24 116.3 79 69.6
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.6e-24 115.9 80 73.8
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 4.7e-24 115.5 64 79.7
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 6.2e-24 115.2 187 45.5
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.2e-24 115.2 80 76.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 8.1e-24 114.8 81 70.4
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.1e-23 114.4 159 49.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-23 114.0 71 76.1
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-23 114.0 71 76.1
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.4e-23 114.0 80 71.2
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.8e-23 113.6 81 70.4
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.8e-23 113.6 81 70.4
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 4.0e-23 112.5 67 79.1
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 4.0e-23 112.5 67 80.6
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.0e-23 112.5 79 73.4
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.0e-23 112.5 183 49.2
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 6.8e-23 111.7 76 75.0
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 8.9e-23 111.3 69 78.3
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-22 110.5 79 67.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.0e-22 110.2 60 85.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 3.4e-22 109.4 105 59.0
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 3.4e-22 109.4 76 73.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 4.4e-22 109.0 83 74.7
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.8e-22 108.6 72 76.4
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 9.9e-22 107.8 219 43.4
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.3e-21 107.5 71 77.5
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.9e-21 105.5 216 39.8
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 8.3e-21 104.8 80 66.2
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.1e-20 104.4 205 41.0
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-20 104.0 65 80.0
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.4e-20 102.1 210 38.6
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.2e-20 101.3 68 76.5
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-19 100.9 57 84.2
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 1.2e-19 100.9 73 69.9
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.6e-19 100.5 231 35.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.1e-19 100.1 63 76.2
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 6.0e-19 98.6 73 67.1
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.0e-18 97.8 67 73.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 3.0e-18 96.3 57 80.7
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.0e-18 96.3 69 68.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.1e-18 95.5 71 69.0
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 5.1e-18 95.5 60 75.0
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 6.6e-18 95.1 72 62.5
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.9e-17 93.6 67 73.1
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.9e-17 93.6 65 67.7
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.3e-17 92.8 80 65.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.3e-17 92.4 75 58.7
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.2e-16 90.9 61 67.2
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.1e-16 90.1 79 57.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 2.1e-16 90.1 73 64.4
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.1e-16 90.1 65 63.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.6e-16 89.4 68 63.2
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 4.7e-16 89.0 66 68.2
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.1e-15 87.8 68 61.8
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.8e-15 87.0 60 71.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.4e-15 86.7 72 61.1
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.1e-15 86.3 66 63.6
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 3.1e-15 86.3 70 58.6
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.8e-15 85.1 73 60.3
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.5e-14 84.0 76 57.9
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.5e-14 84.0 72 65.3
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.6e-14 83.2 79 57.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 3.4e-14 82.8 82 56.1
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 9.9e-14 81.3 153 41.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 9.9e-14 81.3 118 41.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-13 80.5 70 58.6
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.8e-13 79.3 72 55.6
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.8e-13 79.3 67 52.2
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.4e-12 77.4 48 75.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.4e-12 77.4 62 62.9
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 2.4e-12 76.6 77 55.8
Lj7A687T57 Lonicera japonica HOM05D003803 ORTHO05D004456 3.2e-12 76.3 126 49.2
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 3.2e-12 76.3 76 55.3
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 4.2e-12 75.9 80 55.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.1e-11 73.6 47 76.6
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.1e-11 73.6 203 35.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.7e-11 73.2 303 30.0
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 7.8e-11 71.6 106 48.1
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.0e-10 71.2 59 64.4
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.0e-10 71.2 64 56.2
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.7e-10 70.5 47 74.5
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.7e-10 70.5 47 72.3
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.9e-10 69.3 50 74.0
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 5.1e-10 68.9 185 38.9
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.7e-10 68.2 64 53.1
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.3e-09 66.2 64 50.0
RcHm_v2.0_Chr2g0116291 Rosa chinensis HOM05D002764 ORTHO05D002960 9.6e-09 64.7 53 66.0
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 3.6e-08 62.8 177 36.2
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 4.7e-08 62.4 34 79.4
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 8.1e-08 61.6 34 79.4
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 1.8e-07 60.5 50 64.0
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 6.9e-07 58.5 71 43.7
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 9.0e-07 58.2 58 50.0
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.0e-07 58.2 37 75.7
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-06 57.0 64 50.0
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 2.0e-06 57.0 59 49.2
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 2.6e-06 56.6 55 52.7
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.8e-06 55.5 172 32.6
GSVIVG01018076001 Vitis vinifera HOM05D002369 ORTHO05D002435 7.6e-06 55.1 80 38.8
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 9.9e-06 54.7 55 50.9
Sed0012894 Sechium edule HOM05D002369 ORTHO05D002435 9.9e-06 54.7 70 44.3


User provided reference genes

Program Settings