Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 4.3e-203 711.1 350 100.0
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 5.0e-127 458.4 332 71.4
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 3.7e-122 442.2 284 76.4
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 4.9e-122 441.8 289 76.1
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 3.5e-120 435.6 297 72.7
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 3.0e-119 432.6 363 64.2
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 5.6e-118 428.3 346 63.9
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 8.0e-117 424.5 293 71.7
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 8.0e-117 424.5 281 73.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.1e-116 424.1 286 78.3
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.3e-116 422.9 339 62.5
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 5.2e-116 421.8 283 72.4
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.8e-116 421.4 283 72.1
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 2.6e-115 419.5 333 64.6
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.6e-115 419.5 306 69.3
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 3.4e-115 419.1 306 69.0
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 3.4e-115 419.1 318 66.0
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 4.4e-115 418.7 295 72.2
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 9.8e-115 417.5 290 69.7
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 3.7e-114 415.6 283 71.0
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 3.7e-114 415.6 285 70.2
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.1e-113 414.1 279 72.8
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 1.4e-113 413.7 218 87.2
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 4.1e-113 412.1 283 71.0
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 9.2e-113 411.0 279 72.0
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.6e-112 410.2 289 68.5
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 1.6e-112 410.2 249 77.9
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.1e-112 409.8 412 57.5
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 4.6e-112 408.7 321 66.0
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 3.0e-111 406.0 307 67.4
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.0e-111 406.0 291 71.5
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 3.9e-111 405.6 255 78.8
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 8.6e-111 404.4 283 71.0
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.1e-110 404.1 314 65.6
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.9e-110 403.3 336 62.8
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 7.3e-110 401.4 292 69.9
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 9.5e-110 401.0 292 68.2
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 9.5e-110 401.0 285 68.8
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 4.7e-109 398.7 345 61.2
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 4.7e-109 398.7 288 69.8
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 8.1e-109 397.9 300 68.0
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 8.1e-109 397.9 283 67.8
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 1.8e-108 396.7 285 69.1
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 4.0e-108 395.6 265 71.7
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 8.9e-108 394.4 287 68.6
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 1.2e-107 394.0 310 64.5
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 2.0e-107 393.3 277 69.0
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.4e-107 392.1 243 76.5
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 7.5e-107 391.3 292 68.5
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 7.5e-107 391.3 284 67.3
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 2.9e-106 389.4 291 67.7
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 3.7e-106 389.0 286 68.9
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 6.4e-106 388.3 266 71.8
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 8.3e-106 387.9 274 71.2
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.4e-105 387.1 292 66.8
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.4e-105 386.3 283 66.4
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 2.4e-105 386.3 286 68.2
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.2e-104 384.0 273 69.2
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 2.1e-104 383.3 270 71.5
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.7e-104 382.9 246 76.8
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.5e-104 382.5 274 67.2
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.6e-104 382.1 225 77.3
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 4.6e-104 382.1 205 85.4
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.6e-104 382.1 205 85.4
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 4.6e-104 382.1 205 85.4
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 6.0e-104 381.7 288 67.4
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 7.8e-104 381.3 286 67.1
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.0e-103 380.9 205 85.4
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-103 380.9 270 71.1
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 2.3e-103 379.8 294 65.6
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 6.6e-103 378.3 283 65.7
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 8.6e-103 377.9 295 64.1
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 1.1e-102 377.5 267 69.3
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 3.3e-102 375.9 290 66.9
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 5.6e-102 375.2 285 67.0
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.2e-101 374.0 282 66.7
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.1e-101 373.2 286 66.4
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 3.6e-101 372.5 297 63.0
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 4.7e-101 372.1 289 66.8
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 8.1e-101 371.3 271 68.6
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.1e-100 370.9 289 64.0
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.4e-100 370.5 295 64.4
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 2.4e-100 369.8 287 63.4
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 5.2e-100 368.6 288 63.2
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 5.2e-100 368.6 288 63.2
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 5.2e-100 368.6 288 63.5
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 5.2e-100 368.6 289 64.4
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 8.9e-100 367.9 217 78.8
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.5e-99 367.1 290 63.4
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 4.4e-99 365.5 270 67.0
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 5.8e-99 365.2 284 64.1
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 7.6e-99 364.8 216 78.7
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 7.6e-99 364.8 233 74.7
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 1.3e-98 364.0 240 71.7
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.3e-98 364.0 224 73.2
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.7e-98 363.6 205 77.1
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 3.8e-98 362.5 205 79.0
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 3.8e-98 362.5 210 81.0
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 6.4e-98 361.7 289 62.6
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 6.4e-98 361.7 289 62.6
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 8.4e-98 361.3 205 78.0
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 8.4e-98 361.3 290 60.7
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 4.2e-97 359.0 298 61.7
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.2e-96 357.5 245 69.4
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 2.1e-96 356.7 236 69.5
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 2.1e-96 356.7 236 69.5
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 2.1e-96 356.7 238 71.4
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 7.8e-96 354.8 243 68.7
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 1.7e-95 353.6 206 75.7
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 1.1e-94 350.9 194 82.5
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.5e-94 349.7 221 73.8
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.1e-92 344.4 206 75.2
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.1e-92 342.8 261 64.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 6.9e-92 341.7 261 64.4
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 1.2e-91 340.9 281 62.3
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.4e-91 339.3 289 56.1
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.4e-91 339.3 285 56.8
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.3e-87 326.6 234 64.5
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 2.8e-85 319.7 321 57.3
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 4.2e-81 305.8 229 59.8
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.7e-77 292.7 162 80.2
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 2.9e-74 283.1 162 74.7
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 3.8e-74 282.7 160 80.0
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 1.1e-73 281.2 207 59.9
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.2e-73 279.6 151 83.4
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 6.0e-72 275.4 140 91.4
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 6.0e-72 275.4 201 61.7
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 2.0e-67 260.4 144 81.9
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 3.1e-60 236.5 208 55.3
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.1e-57 228.0 122 81.1
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 4.3e-54 216.1 152 67.1
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.4e-47 194.5 156 61.5
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 1.8e-44 184.1 185 47.6
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 4.7e-32 142.9 117 55.6
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 6.5e-26 122.5 146 47.9
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 3.6e-24 116.7 83 57.8
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 1.0e-23 115.2 147 49.0
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.8e-23 114.4 113 55.8
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 3.0e-23 113.6 134 53.7
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 5.7e-22 109.4 136 49.3
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 4.1e-20 103.2 138 47.8
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.8e-18 96.7 130 46.9
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 2.3e-15 87.4 86 55.8
EL10Ac8g18949 Beta vulgaris HOM05D005195 ORTHO05D006088 6.6e-10 69.3 37 75.7
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.6e-06 57.4 104 37.5


User provided reference genes

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