Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 1.7e-57 225.7 106 100.0
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.8e-19 99.4 106 51.9
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 1.8e-19 99.4 99 51.5
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 3.1e-19 98.6 111 45.9
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.6e-18 95.5 111 45.9
Hma1.2p1_0235F.1_g098980 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 4.4e-18 94.7 79 59.5
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 9.8e-18 93.6 92 51.1
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 9.8e-18 93.6 106 53.8
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 9.8e-18 93.6 106 53.8
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 9.8e-18 93.6 106 52.8
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 3.7e-17 91.7 104 47.1
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 6.4e-17 90.9 106 50.9
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 8.3e-17 90.5 105 48.6
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 1.4e-16 89.7 108 45.4
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 1.9e-16 89.4 106 50.9
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 2.4e-16 89.0 93 51.6
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 2.4e-16 89.0 93 51.6
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 4.1e-16 88.2 103 50.5
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 5.4e-16 87.8 102 49.0
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 5.4e-16 87.8 102 49.0
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 5.4e-16 87.8 108 44.4
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 7.1e-16 87.4 106 49.1
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 9.2e-16 87.0 118 47.5
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 9.2e-16 87.0 98 52.0
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 9.2e-16 87.0 105 48.6
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.2e-15 86.7 108 49.1
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 1.6e-15 86.3 106 46.2
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.6e-15 86.3 105 48.6
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 1.6e-15 86.3 105 48.6
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.1e-15 85.9 109 49.5
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 2.7e-15 85.5 63 65.1
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 3.5e-15 85.1 106 47.2
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 4.6e-15 84.7 101 48.5
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 6.0e-15 84.3 97 51.5
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.8e-15 84.0 105 48.6
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.8e-15 84.0 105 48.6
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.0e-14 83.6 101 47.5
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.0e-14 83.6 101 47.5
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 1.0e-14 83.6 103 44.7
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 1.7e-14 82.8 105 46.7
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 2.3e-14 82.4 61 63.9
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 3.0e-14 82.0 98 49.0
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 3.0e-14 82.0 106 48.1
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 3.9e-14 81.6 106 47.2
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 5.1e-14 81.3 106 48.1
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 5.1e-14 81.3 106 49.1
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 6.6e-14 80.9 106 47.2
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 6.6e-14 80.9 109 45.9
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 6.6e-14 80.9 109 45.9
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 8.6e-14 80.5 109 45.9
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.6e-14 80.5 106 44.3
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 8.6e-14 80.5 101 45.5
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 8.6e-14 80.5 69 59.4
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 8.6e-14 80.5 101 49.5
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 8.6e-14 80.5 107 46.7
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.1e-13 80.1 101 47.5
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 1.1e-13 80.1 105 47.6
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 1.1e-13 80.1 72 58.3
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 1.5e-13 79.7 106 46.2
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.5e-13 79.7 109 45.9
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.5e-13 79.7 109 45.9
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.9e-13 79.3 106 46.2
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 1.9e-13 79.3 111 47.7
Medtr4g126400 Medicago truncatula HOM05D002570 ORTHO05D002689 1.9e-13 79.3 113 39.8
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 2.5e-13 79.0 106 47.2
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 3.3e-13 78.6 68 55.9
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 3.3e-13 78.6 78 50.0
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 3.3e-13 78.6 63 61.9
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 4.3e-13 78.2 100 45.0
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 7.3e-13 77.4 102 43.1
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 7.3e-13 77.4 106 45.3
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 9.5e-13 77.0 106 45.3
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 1.2e-12 76.6 108 42.6
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 1.2e-12 76.6 97 49.5
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 1.6e-12 76.3 97 47.4
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.6e-12 76.3 108 43.5
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 1.6e-12 76.3 100 48.0
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 1.6e-12 76.3 97 46.4
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 1.6e-12 76.3 64 56.2
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.1e-12 75.9 68 54.4
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.1e-12 75.9 108 42.6
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 2.8e-12 75.5 67 53.7
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 3.6e-12 75.1 97 46.4
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 4.7e-12 74.7 100 41.0
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 4.7e-12 74.7 105 41.9
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 6.2e-12 74.3 95 45.3
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 8.1e-12 73.9 97 46.4
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 8.1e-12 73.9 103 44.7
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 8.1e-12 73.9 108 45.4
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.1e-11 73.6 106 42.5
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.1e-11 73.6 68 52.9
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 3.1e-11 72.0 108 41.7
FAN17G2389 Fragaria x ananassa HOM05D030384 ORTHO05D002689 4.0e-11 71.6 71 50.7
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 4.0e-11 71.6 110 42.7
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 4.0e-11 71.6 97 47.4
Oeu036442.1 Olea europaea HOM05D002570 ORTHO05D002689 5.2e-11 71.2 61 60.7
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 6.8e-11 70.9 105 42.9
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.0e-10 69.3 102 42.2
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 2.6e-10 68.9 71 49.3
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 2.6e-10 68.9 85 47.1
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 2.6e-10 68.9 66 51.5
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 3.4e-10 68.6 98 42.9
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 4.4e-10 68.2 97 45.4
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 5.8e-10 67.8 67 49.3
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 5.8e-10 67.8 103 41.7
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 7.6e-10 67.4 68 52.9
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 7.6e-10 67.4 96 39.6
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 7.6e-10 67.4 96 41.7
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 7.6e-10 67.4 106 36.8
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 9.9e-10 67.0 106 39.6
Zm00001eb071700 Zea mays HOM05D002570 ORTHO05D002689 1.3e-09 66.6 96 40.6
DCAR_016323 Daucus carota HOM05D002570 ORTHO05D002689 1.7e-09 66.2 105 41.0
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 1.7e-09 66.2 98 44.9
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 2.2e-09 65.9 96 38.5
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 4.9e-09 64.7 69 49.3
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 4.9e-09 64.7 69 49.3
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 4.9e-09 64.7 99 40.4
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 4.9e-09 64.7 98 38.8
CAN.G1089.3 Capsicum annuum HOM05D002570 ORTHO05D002689 6.4e-09 64.3 67 52.2
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.1e-08 63.5 102 41.2
Zm00001eb274770 Zea mays HOM05D002570 ORTHO05D002689 1.1e-08 63.5 99 43.4
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 1.4e-08 63.2 68 48.5
Solyc06g068620.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.4e-08 63.2 89 43.8
Sopen06g025880 Solanum pennellii HOM05D002570 ORTHO05D002689 1.4e-08 63.2 89 43.8
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.9e-08 62.8 98 35.7
Os04g0658200 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 2.4e-08 62.4 103 35.0
Os04g0603400 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 3.2e-08 62.0 95 41.1
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 3.2e-08 62.0 68 47.1
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 3.2e-08 62.0 107 35.5
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 4.1e-08 61.6 87 42.5
Sc10g0008480 Simmondsia chinensis HOM05D002570 ORTHO05D002689 4.1e-08 61.6 82 42.7
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 7.1e-08 60.8 96 37.5
PGSC0003DMG400028926 Solanum tuberosum HOM05D002570 ORTHO05D002689 9.2e-08 60.5 58 53.4
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 1.2e-07 60.1 88 39.8
Peaxi162Scf00207g00335 Petunia axillaris HOM05D002570 ORTHO05D002689 1.6e-07 59.7 69 49.3
Zm00001eb430390 Zea mays HOM05D002570 ORTHO05D002689 1.6e-07 59.7 64 46.9
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 2.1e-07 59.3 68 45.6
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 2.7e-07 58.9 98 38.8
unitig_8.g3045 Utricularia gibba HOM05D002570 ORTHO05D002689 2.7e-07 58.9 79 39.2
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 3.5e-07 58.5 94 34.0
Nitab4.5_0007120g0040 Nicotiana tabacum HOM05D002570 ORTHO05D002689 6.0e-07 57.8 100 38.0
Zm00001eb414530 Zea mays HOM05D002570 ORTHO05D002689 6.0e-07 57.8 92 39.1
Nitab4.5_0007120g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 7.8e-07 57.4 99 38.4
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 1.3e-06 56.6 96 38.5
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.7e-06 56.2 68 44.1
Medtr2g105430 Medicago truncatula HOM05D002570 ORTHO05D002689 1.7e-06 56.2 58 46.6
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 1.7e-06 56.2 97 38.1
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 2.3e-06 55.8 86 39.5
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 2.3e-06 55.8 83 41.0
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 3.0e-06 55.5 68 41.2
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 3.0e-06 55.5 82 36.6
Gohir.A05G208300 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.0e-06 55.5 85 38.8
Lalb_Chr14g0376161 Lupinus albus HOM05D002570 ORTHO05D002689 3.9e-06 55.1 77 42.9
Psat5g308160 Pisum sativum HOM05D002570 ORTHO05D002689 3.9e-06 55.1 85 41.2
MELO3C028978.2 Cucumis melo HOM05D002570 ORTHO05D002689 5.1e-06 54.7 62 46.8
Gorai.009G218400 Gossypium raimondii HOM05D002570 ORTHO05D002689 5.1e-06 54.7 85 38.8
SEGI_16988 Sequoiadendron giganteum HOM05D002570 ORTHO05D002689 5.1e-06 54.7 54 46.3
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 5.1e-06 54.7 88 36.4
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 8.6e-06 53.9 92 31.5
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 8.6e-06 53.9 86 38.4
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 8.6e-06 53.9 98 35.7
HPP92_018571 Vanilla planifolia HOM05D002570 ORTHO05D002689 8.6e-06 53.9 59 45.8


User provided reference genes

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