Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 9.9e-287 989.6 552 100.0
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 8.9e-195 684.1 588 69.7
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 9.1e-107 391.7 546 49.6
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 3.8e-97 359.8 564 47.2
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 2.8e-87 327.0 611 44.4
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 7.5e-85 318.9 553 44.7
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 7.3e-80 302.4 551 45.0
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 1.2e-79 301.6 587 44.0
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.7e-76 291.2 588 41.8
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 3.2e-75 287.0 538 40.5
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 2.7e-74 283.9 553 43.0
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 7.8e-74 282.3 536 43.3
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.5e-72 278.1 551 40.8
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 1.2e-71 275.0 614 38.6
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.1e-64 251.9 565 38.9
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.9e-64 251.1 563 39.1
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 7.3e-64 249.2 559 38.1
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 8.1e-63 245.7 533 39.6
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 3.9e-57 226.9 555 37.1
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 5.1e-57 226.5 562 36.8
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 4.3e-56 223.4 550 36.9
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.6e-55 221.5 533 35.1
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.6e-55 221.5 558 38.4
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 4.0e-54 216.9 543 36.5
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 2.6e-53 214.2 336 44.9
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 4.4e-53 213.4 557 38.2
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.3e-52 211.8 549 33.7
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.7e-52 211.5 551 34.5
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.7e-52 211.5 551 34.7
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.6e-50 204.9 536 34.9
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.1e-50 204.5 547 36.4
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 6.0e-50 203.0 216 54.6
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 1.3e-49 201.8 604 34.1
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 9.6e-48 195.7 550 35.3
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 3.6e-47 193.7 342 41.5
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 3.6e-47 193.7 535 34.2
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 1.1e-46 192.2 355 40.8
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 2.4e-46 191.0 554 34.5
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 4.0e-46 190.3 196 57.1
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 5.3e-46 189.9 216 52.8
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 6.9e-46 189.5 542 35.4
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.2e-45 188.7 530 33.8
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 2.0e-45 188.0 140 67.1
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 9.9e-45 185.7 540 32.6
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 9.9e-45 185.7 536 33.4
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.3e-44 185.3 552 35.1
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.9e-44 184.1 188 56.4
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 8.4e-44 182.6 536 35.6
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 5.4e-43 179.9 534 32.8
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 1.2e-42 178.7 265 47.2
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.2e-42 178.7 555 33.9
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 3.5e-42 177.2 309 43.4
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 6.0e-42 176.4 555 34.6
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 6.7e-41 172.9 125 69.6
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 1.9e-40 171.4 508 36.8
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 3.3e-40 170.6 549 35.7
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 9.6e-40 169.1 111 77.5
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 9.6e-40 169.1 540 32.6
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 1.3e-39 168.7 554 31.2
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 1.6e-39 168.3 554 33.4
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 2.1e-39 167.9 555 31.0
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 6.2e-39 166.4 547 32.5
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 1.1e-38 165.6 528 32.6
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.8e-38 164.9 640 32.2
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 4.0e-38 163.7 328 41.2
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 9.0e-38 162.5 314 42.4
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 9.0e-38 162.5 554 30.5
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.5e-37 161.8 128 69.5
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 2.0e-37 161.4 534 31.6
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 2.0e-37 161.4 554 30.7
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 9.9e-37 159.1 444 35.8
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 9.9e-37 159.1 532 33.5
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.7e-36 158.3 335 38.5
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 1.7e-36 158.3 557 30.7
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 4.9e-36 156.8 121 70.2
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 1.1e-35 155.6 108 73.1
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.4e-35 155.2 224 45.1
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 1.9e-35 154.8 99 73.7
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 1.9e-35 154.8 87 82.8
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.4e-35 154.5 534 31.8
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 2.4e-35 154.5 128 66.4
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 5.5e-35 153.3 99 72.7
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 7.1e-35 152.9 128 66.4
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 9.3e-35 152.5 547 30.9
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 1.0e-33 149.1 120 65.8
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 2.3e-33 147.9 543 32.2
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.7e-33 146.0 265 42.3
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 8.7e-33 146.0 294 41.2
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.5e-32 145.2 482 34.4
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 2.5e-32 144.4 221 44.3
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 5.6e-32 143.3 126 63.5
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 7.4e-32 142.9 192 48.4
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 9.6e-32 142.5 127 62.2
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.3e-31 142.1 119 61.3
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.3e-31 142.1 119 61.3
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.3e-31 142.1 119 61.3
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 1.3e-31 142.1 126 62.7
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 1.6e-31 141.7 114 66.7
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 1.6e-31 141.7 114 66.7
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 1.6e-31 141.7 114 66.7
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 4.8e-31 140.2 340 35.0
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 6.2e-31 139.8 350 35.4
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 5.3e-30 136.7 557 29.8
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 9.0e-30 136.0 257 40.9
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.2e-29 135.6 328 38.4
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.5e-29 135.2 266 41.7
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 7.6e-29 132.9 554 29.4
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 1.3e-28 132.1 564 28.7
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 6.5e-28 129.8 325 36.9
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.9e-27 128.3 132 54.5
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 1.9e-27 128.3 132 54.5
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 7.1e-27 126.3 518 31.3
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 2.1e-26 124.8 141 51.1
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.3e-25 122.1 345 32.8
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 5.1e-25 120.2 350 35.1
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 1.1e-24 119.0 204 40.7
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 3.3e-24 117.5 547 29.6
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 5.7e-24 116.7 200 39.5
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 7.4e-24 116.3 102 63.7
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 1.3e-23 115.5 93 67.7
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-22 111.7 73 71.2
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.8e-22 111.7 99 59.6
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 6.9e-22 109.8 102 61.8
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.2e-21 109.0 495 28.3
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 6.5e-20 103.2 62 80.6
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 2.6e-13 81.3 97 55.7
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.2e-12 78.2 472 26.7
Oeu003868.2 Olea europaea HOM05D005890 ORTHO05D006717 6.5e-12 76.6 197 38.1
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 3.2e-11 74.3 292 31.8
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 3.2e-11 74.3 55 63.6
CSS0038668 Camellia sinensis var. sinensis HOM05D014000 ORTHO05D006717 8.8e-09 66.2 73 56.2
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 8.8e-09 66.2 80 52.5
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 2.6e-08 64.7 34 85.3
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 2.6e-08 64.7 34 85.3
DCAR_001127 Daucus carota HOM05D000703 ORTHO05D006717 2.8e-07 61.2 57 52.6
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 1.8e-06 58.5 98 39.8


User provided reference genes

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