Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 0.0e+00 1189.5 800 100.0
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 4.9e-154 549.3 1013 47.8
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.5e-142 510.4 973 40.4
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 9.1e-140 501.9 1025 46.0
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 4.2e-121 439.9 1009 46.6
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 9.4e-121 438.7 1009 47.4
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 1.4e-119 434.9 1008 46.9
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 5.2e-119 433.0 1009 48.3
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 5.5e-113 412.9 1008 43.5
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 4.7e-112 409.8 1011 45.8
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.5e-110 404.8 1008 45.7
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.2e-109 401.0 970 43.8
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 7.0e-108 396.0 905 45.2
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 1.6e-107 394.8 1013 42.0
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.7e-106 391.3 1008 44.0
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 2.3e-106 391.0 1008 44.0
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 1.0e-103 382.1 1025 42.4
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.4e-100 371.7 1008 40.1
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 2.4e-100 370.9 1007 40.7
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.2e-99 368.6 976 45.4
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 7.8e-99 365.9 1015 40.7
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 3.3e-97 360.5 1013 45.5
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 6.4e-93 346.3 682 33.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 8.6e-90 335.9 1008 41.7
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 6.8e-87 326.2 1013 39.7
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.2e-86 325.5 1011 41.5
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.0e-86 324.7 1018 41.2
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 2.6e-86 324.3 951 39.4
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 3.4e-86 323.9 1012 36.5
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 7.5e-86 322.8 1014 39.8
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.9e-85 320.9 1012 37.0
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.7e-85 320.5 1018 41.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 2.7e-83 314.3 1011 37.8
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 2.7e-83 314.3 1008 37.9
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.3e-82 312.0 1008 43.5
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.0e-82 310.8 1008 41.4
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 6.6e-82 309.7 1015 38.1
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.5e-81 307.8 1011 39.3
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 3.3e-81 307.4 1011 38.7
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 4.3e-81 307.0 682 32.4
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 5.6e-81 306.6 1008 36.7
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 2.6e-78 297.7 831 44.6
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 3.7e-77 293.9 1009 41.6
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 2.3e-74 284.6 957 37.5
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 3.0e-74 284.3 1008 36.1
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.5e-73 281.2 1007 38.1
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 9.6e-73 279.3 1012 39.5
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 1.2e-72 278.9 1015 36.6
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 2.1e-72 278.1 1007 39.1
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 6.2e-72 276.6 680 33.7
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 4.4e-70 270.4 1008 35.0
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 5.8e-70 270.0 1006 37.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 1.1e-68 265.8 680 28.2
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.1e-68 265.8 999 36.4
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.1e-68 265.8 1001 37.1
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.7e-66 258.5 681 31.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 2.3e-66 258.1 886 38.9
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 1.5e-65 255.4 838 47.3
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.8e-63 248.4 911 41.3
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 2.4e-63 248.1 1013 34.7
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 4.9e-61 240.4 858 40.3
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 1.1e-60 239.2 1008 36.6
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 7.1e-60 236.5 1035 38.9
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 3.0e-58 231.1 720 38.5
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 3.0e-58 231.1 842 45.5
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 5.3e-55 220.3 966 38.6
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 9.0e-55 219.5 192 55.7
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 1.2e-54 219.2 192 55.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 2.0e-54 218.4 192 54.7
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 1.7e-53 215.3 1013 35.9
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 4.9e-53 213.8 193 54.4
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 7.1e-52 209.9 192 53.1
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.7e-51 208.0 192 51.6
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 3.9e-50 204.1 680 25.1
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 4.9e-45 187.2 525 50.5
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 1.1e-44 186.0 181 53.6
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 2.1e-43 181.8 518 49.8
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 3.0e-42 177.9 194 50.0
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 1.1e-41 176.0 964 36.8
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.5e-41 175.6 469 53.3
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 7.6e-38 163.3 197 47.2
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 7.6e-38 163.3 199 46.2
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 7.6e-38 163.3 199 46.2
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 1.2e-35 156.0 196 45.4
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 3.5e-35 154.5 200 45.5
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 3.5e-35 154.5 201 44.8
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 3.3e-33 147.9 148 48.6
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 7.4e-33 146.7 194 43.3
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 6.5e-29 133.7 814 41.8
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 6.1e-27 127.1 442 51.6
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.3e-26 125.2 92 64.1
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 8.8e-26 123.2 97 58.8
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.0e-25 122.1 145 40.7
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.7e-25 120.6 429 24.5
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 2.4e-23 115.2 136 46.3
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.2e-21 108.6 91 57.1
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 4.7e-19 100.9 151 37.7
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 3.9e-18 97.8 190 31.6
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 4.4e-17 94.4 109 40.4
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 7.4e-17 93.6 437 48.3
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 5.3e-15 87.4 144 39.6
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 5.3e-15 87.4 555 40.5
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 1.6e-14 85.9 95 46.3
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 2.2e-13 82.0 143 37.1
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.0e-13 80.9 141 36.2
AUR62039733 Chenopodium quinoa HOM05D006842 ORTHO05D008908 5.2e-10 70.9 72 48.6
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 7.5e-09 67.0 181 26.5
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 9.7e-09 66.6 76 46.1
Sc09g0008960 Simmondsia chinensis HOM05D000001 ORTHO05D000003 2.2e-08 65.5 166 24.7
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 4.8e-08 64.3 173 23.7
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 8.2e-08 63.5 179 22.9
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 8.2e-08 63.5 188 24.5
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.4e-07 62.8 140 27.1
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 2.4e-07 62.0 184 26.6
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 2.4e-07 62.0 184 26.6
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 2.4e-07 62.0 178 24.7
QL07p033370 Quercus lobata HOM05D020603 ORTHO05D019575 2.4e-07 62.0 110 34.5
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 4.1e-07 61.2 173 24.9
AagrBONN_evm.TU.Sc2ySwM_228.4493 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-07 61.2 151 29.1
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 4.1e-07 61.2 178 23.0
MBI04_g08374_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.3e-07 60.8 173 29.5
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 5.3e-07 60.8 164 22.6
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 5.3e-07 60.8 164 22.6
AagrBONN_evm.TU.Sc2ySwM_117.3576 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-07 60.5 178 28.1
AagrBONN_evm.TU.Sc2ySwM_228.5789 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-07 60.5 166 27.7
AagrBONN_evm.TU.Sc2ySwM_368.2289 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-07 60.5 168 29.8
CiPaw.03G146600 Carya illinoinensis HOM05D000001 ORTHO05D000003 7.0e-07 60.5 145 29.0
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 7.0e-07 60.5 191 23.6
MBI04_g17084_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.1e-07 60.1 146 32.2
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 9.1e-07 60.1 119 28.6
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 1.2e-06 59.7 178 22.5
AagrBONN_evm.TU.Sc2ySwM_368.2687 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 178 27.0
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 1.2e-06 59.7 152 24.3
MD15G1390700 Malus domestica HOM05D000001 ORTHO05D010175 1.6e-06 59.3 195 27.7
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.0e-06 58.9 183 23.0
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 2.0e-06 58.9 156 23.7
PGSC0003DMG400013237 Solanum tuberosum HOM05D007545 ORTHO05D009579 2.0e-06 58.9 132 29.5
AagrBONN_evm.TU.Sc2ySwM_362.646 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.5 168 29.8
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 2.7e-06 58.5 109 27.5
Thecc.09G229300 Theobroma cacao HOM05D000001 ORTHO05D000003 2.7e-06 58.5 145 27.6
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 3.5e-06 58.2 178 23.0
Atru.chr13.946 Acer truncatum HOM05D000001 ORTHO05D010175 3.5e-06 58.2 150 30.0
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 3.5e-06 58.2 173 24.3
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.5e-06 58.2 183 22.4
MD16G1250500 Malus domestica HOM05D006842 ORTHO05D008908 3.5e-06 58.2 51 54.9
Peaxi162Scf00238g00023 Petunia axillaris HOM05D000001 ORTHO05D000003 3.5e-06 58.2 168 29.8
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 3.5e-06 58.2 168 25.0
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 4.5e-06 57.8 178 23.0
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 4.5e-06 57.8 178 23.0
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 4.5e-06 57.8 183 22.4
FAN03G0773 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-06 57.8 139 27.3
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 4.5e-06 57.8 153 24.2
Lju41C42T17 Lonicera japonica HOM05D000001 ORTHO05D000003 4.5e-06 57.8 108 31.5
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 4.5e-06 57.8 178 22.5
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 4.5e-06 57.8 183 22.4
TAR626G0987 Trochodendron aralioides HOM05D000001 ORTHO05D010139 4.5e-06 57.8 139 29.5
AagrBONN_evm.TU.Sc2ySwM_362.2733 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-06 57.4 144 25.7
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 5.9e-06 57.4 178 22.5
Dinv12660 Davidia involucrata HOM05D000001 ORTHO05D000003 5.9e-06 57.4 146 28.8
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 5.9e-06 57.4 59 42.4
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 5.9e-06 57.4 179 21.8
AagrBONN_evm.TU.Sc2ySwM_368.704 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 57.0 140 27.1
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 7.7e-06 57.0 178 22.5
FvH4_7g03841 Fragaria vesca HOM05D000001 ORTHO05D000003 7.7e-06 57.0 139 27.3
Gohir.A05G020800 Gossypium hirsutum HOM05D000001 ORTHO05D000003 7.7e-06 57.0 156 29.5
Medtr5g024100 Medicago truncatula HOM05D000001 ORTHO05D015411 7.7e-06 57.0 172 27.3
PSO541G3997 Papaver somniferum HOM05D000001 ORTHO05D010139 7.7e-06 57.0 164 29.3
Prupe.1G539500 Prunus persica HOM05D000001 ORTHO05D010175 7.7e-06 57.0 195 27.7
Prupe.2G043400 Prunus persica HOM05D000001 ORTHO05D000003 7.7e-06 57.0 149 25.5
Solyc11g011410.3 Solanum lycopersicum HOM05D007545 ORTHO05D009579 7.7e-06 57.0 129 29.5


User provided reference genes

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