Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25412 Davidia involucrata HOM05D008239 ORTHO05D009800 7.4e-267 923.3 471 100.0
Dinv12600 Davidia involucrata HOM05D008239 ORTHO05D009800 2.3e-159 566.2 304 94.4
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 1.1e-129 467.6 392 64.5
Rhsim06G0231700 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.5e-73 281.2 365 46.0
Hma1.2p1_0120F.1_g057080 Hydrangea macrophylla HOM05D008239 ORTHO05D009800 1.9e-68 264.2 312 48.1
Dinv23281 Davidia involucrata HOM05D008239 ORTHO05D009800 4.8e-64 249.6 362 42.3
Dinv42357 Davidia involucrata HOM05D008239 ORTHO05D009800 2.8e-56 223.8 471 36.9
Dinv23282 Davidia involucrata HOM05D008239 ORTHO05D009800 5.5e-52 209.5 320 39.7
Dinv30487 Davidia involucrata HOM05D008239 ORTHO05D009800 1.6e-51 208.0 279 44.4
Dinv38088 Davidia involucrata HOM05D008239 ORTHO05D009800 3.5e-51 206.8 407 38.1
Dinv30439 Davidia involucrata HOM05D008239 ORTHO05D009800 5.9e-46 189.5 273 41.8
Dinv27632 Davidia involucrata HOM05D008239 ORTHO05D009800 1.3e-45 188.3 460 33.0
Dinv38087 Davidia involucrata HOM05D008239 ORTHO05D009800 9.4e-44 182.2 322 36.0
Dinv41180 Davidia involucrata HOM05D008239 ORTHO05D009800 5.7e-41 172.9 298 37.9
Dinv41765 Davidia involucrata HOM05D008239 ORTHO05D009800 6.3e-40 169.5 485 29.7
Dinv04007 Davidia involucrata HOM05D008239 ORTHO05D009800 4.5e-38 163.3 455 32.3
Dinv25443 Davidia involucrata HOM05D008239 ORTHO05D009800 2.2e-37 161.0 472 31.1
Rhsim03G0008000 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.9e-37 160.6 271 42.1
Dinv25440 Davidia involucrata HOM05D008239 ORTHO05D009800 1.1e-36 158.7 296 37.8
vmacro22053 Vaccinium macrocarpon HOM05D008239 ORTHO05D009800 1.1e-36 158.7 419 32.7
Dinv42361 Davidia involucrata HOM05D008239 ORTHO05D009800 1.2e-35 155.2 260 38.1
COL.COLO4_19868 Corchorus olitorius HOM05D008239 ORTHO05D009800 6.1e-35 152.9 289 32.9
Dinv30486 Davidia involucrata HOM05D010983 ORTHO05D009800 6.7e-34 149.4 281 34.2
Cc03_g02640 Coffea canephora HOM05D008239 ORTHO05D009800 3.3e-33 147.1 265 35.1
Dinv41766 Davidia involucrata HOM05D008239 ORTHO05D009800 1.7e-32 144.8 427 30.4
Dinv07268 Davidia involucrata HOM05D008239 ORTHO05D009800 2.2e-32 144.4 243 39.1
Os05g0124000 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 6.3e-32 142.9 284 32.0
COL.COLO4_17217 Corchorus olitorius HOM05D008239 ORTHO05D009800 4.1e-31 140.2 318 33.6
Dinv27633 Davidia involucrata HOM05D008239 ORTHO05D009800 4.1e-31 140.2 188 42.0
Dinv42358 Davidia involucrata HOM05D008239 ORTHO05D009800 4.1e-31 140.2 394 31.5
COL.COLO4_17209 Corchorus olitorius HOM05D008239 ORTHO05D009800 2.0e-30 137.9 262 34.7
Dinv04006 Davidia involucrata HOM05D008239 ORTHO05D009800 1.0e-29 135.6 189 41.3
Rhsim06G0198100 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.0e-29 135.6 446 31.4
Os05g0124600 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 1.9e-28 131.3 284 32.4
Os07g0515900 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 7.2e-28 129.4 271 34.3
COL.COLO4_12090 Corchorus olitorius HOM05D008239 ORTHO05D009800 1.6e-27 128.3 196 37.8
Os12g0118800 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 4.7e-27 126.7 269 29.7
Dinv21189 Davidia involucrata HOM05D008239 ORTHO05D009800 6.7e-26 122.9 307 32.9
Cc02_g10120 Coffea canephora HOM05D008239 ORTHO05D009800 1.1e-25 122.1 197 38.1
COL.COLO4_19875 Corchorus olitorius HOM05D008239 ORTHO05D009800 1.5e-25 121.7 228 37.3
Os07g0515700 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 2.6e-25 120.9 339 29.5
DCAR_023499 Daucus carota HOM05D008239 ORTHO05D009800 7.4e-25 119.4 225 31.6
Os01g0943800 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 2.2e-24 117.9 289 31.8
COL.COLO4_04045 Corchorus olitorius HOM05D008239 ORTHO05D009800 8.2e-24 115.9 277 33.6
COL.COLO4_16500 Corchorus olitorius HOM05D008239 ORTHO05D009800 8.2e-24 115.9 236 36.4
Os01g0942900 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 8.2e-24 115.9 268 32.5
Dinv41768 Davidia involucrata HOM05D018862 ORTHO05D009800 4.1e-23 113.6 339 28.9
Dinv25441 Davidia involucrata HOM05D008239 ORTHO05D009800 7.0e-23 112.8 198 37.4
Cc02_g10110 Coffea canephora HOM05D008239 ORTHO05D009800 9.1e-23 112.5 228 35.1
Os11g0219400 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 9.1e-23 112.5 242 32.2
Zm00001eb205000 Zea mays HOM05D013330 ORTHO05D009800 2.0e-22 111.3 276 31.2
EL10Ac3g05534 Beta vulgaris HOM05D025186 ORTHO05D009800 2.2e-21 107.8 304 31.2
CSS0028968 Camellia sinensis var. sinensis HOM05D008239 ORTHO05D009800 5.0e-21 106.7 147 43.5
TAR622G0243 Trochodendron aralioides HOM05D007472 ORTHO05D009477 7.2e-20 102.8 305 30.2
PGR142G1798 Punica granatum HOM05D007472 ORTHO05D009477 4.7e-19 100.1 265 31.3
Os10g0102200 Oryza sativa ssp. japonica HOM05D013330 ORTHO05D009800 1.0e-18 99.0 244 31.6
MBI14_g12118_MAGBIO Magnolia biondii HOM05D007472 ORTHO05D009477 4.0e-18 97.1 307 29.6
Cc02_g10150 Coffea canephora HOM05D008239 ORTHO05D009800 2.0e-17 94.7 200 31.5
Dinv21165 Davidia involucrata HOM05D008239 ORTHO05D009800 2.0e-17 94.7 86 54.7
AUR62037189 Chenopodium quinoa HOM05D025186 ORTHO05D009800 3.4e-17 94.0 166 39.8
Cc00_g27060 Coffea canephora HOM05D008239 ORTHO05D009800 5.7e-17 93.2 148 41.9
SEGI_07251 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 5.7e-17 93.2 219 29.7
Rhsim13G0234400 Rhododendron simsii HOM05D008239 ORTHO05D009800 3.7e-16 90.5 203 35.0
Cfa007540 Carpinus fangiana HOM05D007472 ORTHO05D009477 6.3e-16 89.7 241 29.9
Aa31LG2G4320 Aethionema arabicum HOM05D007472 ORTHO05D009477 8.3e-16 89.4 216 31.9
COL.COLO4_12089 Corchorus olitorius HOM05D008239 ORTHO05D009800 8.3e-16 89.4 296 32.8
Haze_14546 Corylus avellana HOM05D007472 ORTHO05D009477 3.1e-15 87.4 277 27.8
THA.LOC104805462 Tarenaya hassleriana HOM05D007472 ORTHO05D009477 7.0e-15 86.3 233 29.2
TWI60G0556 Tripterygium wilfordii HOM05D007472 ORTHO05D009477 7.0e-15 86.3 194 34.0
Sp2g17510 Schrenkiella parvula HOM05D007472 ORTHO05D009477 9.1e-15 85.9 269 29.7
A02p36140 Brassica napus HOM05D007472 ORTHO05D009477 2.7e-14 84.3 202 33.7
BraA02t08613Z Brassica rapa HOM05D007472 ORTHO05D009477 2.7e-14 84.3 202 33.7
AUR62020016 Chenopodium quinoa HOM05D023548 ORTHO05D009800 2.7e-14 84.3 259 30.9
Aqoxy1G01920 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 3.5e-14 84.0 335 28.1
AL5G18670 Arabidopsis lyrata HOM05D007472 ORTHO05D009477 3.5e-14 84.0 256 27.3
AUR62013258 Chenopodium quinoa HOM05D023548 ORTHO05D009800 3.5e-14 84.0 259 30.9
Dinv24381 Davidia involucrata HOM05D008239 ORTHO05D009800 3.5e-14 84.0 85 50.6
COL.COLO4_27100 Corchorus olitorius HOM05D008239 ORTHO05D009800 4.5e-14 83.6 232 33.2
Manes.01G090001 Manihot esculenta HOM05D007472 ORTHO05D009477 1.0e-13 82.4 234 27.4
CARHR151910 Cardamine hirsuta HOM05D007472 ORTHO05D009477 1.7e-13 81.6 271 28.8
Dinv20749 Davidia involucrata HOM05D018862 ORTHO05D009800 1.7e-13 81.6 357 24.6
BcaC03g17537 Brassica carinata HOM05D007472 ORTHO05D009477 2.2e-13 81.3 226 31.0
BolC2t11563H Brassica oleracea HOM05D007472 ORTHO05D009477 2.2e-13 81.3 226 31.0
C02p55120 Brassica napus HOM05D007472 ORTHO05D009477 6.5e-13 79.7 226 31.0
ATR0037G017 Amborella trichopoda HOM05D007472 ORTHO05D009477 1.5e-12 78.6 254 28.3
CSS0022853 Camellia sinensis var. sinensis HOM05D008239 ORTHO05D009800 1.5e-12 78.6 107 42.1
Dinv41767 Davidia involucrata HOM05D018862 ORTHO05D009800 1.5e-12 78.6 348 25.6
RcHm_v2.0_Chr2g0168671 Rosa chinensis HOM05D007472 ORTHO05D009477 1.9e-12 78.2 183 30.6
BcaB07g30111 Brassica carinata HOM05D007472 ORTHO05D009477 2.5e-12 77.8 226 32.3
Zm00001eb029370 Zea mays HOM05D007472 ORTHO05D009477 2.5e-12 77.8 189 34.9
Potri.004G129100 Populus trichocarpa HOM05D007472 ORTHO05D009477 3.2e-12 77.4 218 30.3
Carub.0005s0743 Capsella rubella HOM05D007472 ORTHO05D009477 4.2e-12 77.0 233 28.8
FAN02G3469 Fragaria x ananassa HOM05D007472 ORTHO05D009477 4.2e-12 77.0 222 27.9
FAN05G4432 Fragaria x ananassa HOM05D007472 ORTHO05D009477 5.5e-12 76.6 229 27.5
Thhalv10009510m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 7.2e-12 76.3 253 26.9
SHI06832 Sapria himalayana HOM05D007472 ORTHO05D000001 9.4e-12 75.9 343 24.8
FvH4_6g48800 Fragaria vesca HOM05D007472 ORTHO05D009477 2.1e-11 74.7 222 27.9
Prupe.3G268600 Prunus persica HOM05D007472 ORTHO05D009477 3.6e-11 73.9 214 29.0
Thhalv10003677m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 6.1e-11 73.2 229 27.5
COL.COLO4_19864 Corchorus olitorius HOM05D008239 ORTHO05D009800 8.0e-11 72.8 123 35.0
MD09G1050300 Malus domestica HOM05D007472 ORTHO05D009477 8.0e-11 72.8 172 33.7
Thecc.04G080300 Theobroma cacao HOM05D007472 ORTHO05D009477 8.0e-11 72.8 217 31.3
FAN09G3065 Fragaria x ananassa HOM05D007472 ORTHO05D009477 1.8e-10 71.6 187 28.3
Os12g0572800 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 1.8e-10 71.6 211 32.2
Rhsim03G0097700 Rhododendron simsii HOM05D008239 ORTHO05D009800 1.8e-10 71.6 163 36.2
COL.COLO4_24278 Corchorus olitorius HOM05D008239 ORTHO05D009800 2.3e-10 71.2 123 39.8
FvH4_6g49850 Fragaria vesca HOM05D007472 ORTHO05D009477 5.2e-10 70.1 156 28.8
Rhsim03G0009800 Rhododendron simsii HOM05D008239 ORTHO05D009800 8.8e-10 69.3 146 36.3
AUR62013259 Chenopodium quinoa HOM05D023548 ORTHO05D009800 2.0e-09 68.2 183 31.7
AUR62020015 Chenopodium quinoa HOM05D023548 ORTHO05D009800 2.0e-09 68.2 183 31.7
Ciclev10011009m.g Citrus clementina HOM05D007472 ORTHO05D009477 2.0e-09 68.2 253 28.1
QL04p014916 Quercus lobata HOM05D007472 ORTHO05D009477 2.0e-09 68.2 148 33.8
AUR62039817 Chenopodium quinoa HOM05D007472 ORTHO05D009477 2.6e-09 67.8 321 24.9
QL04p014554 Quercus lobata HOM05D007472 ORTHO05D009477 3.4e-09 67.4 148 34.5
Gorai.001G238800 Gossypium raimondii HOM05D007472 ORTHO05D009477 9.8e-09 65.9 222 30.2
Gohir.D07G211400 Gossypium hirsutum HOM05D007472 ORTHO05D009477 2.2e-08 64.7 222 30.2
FvH4_1g02370 Fragaria vesca HOM05D007472 ORTHO05D009477 4.9e-08 63.5 203 26.6
Gohir.A07G205200 Gossypium hirsutum HOM05D007472 ORTHO05D009477 8.3e-08 62.8 219 30.1
RcHm_v2.0_Chr6g0246231 Rosa chinensis HOM05D007472 ORTHO05D009477 1.4e-07 62.0 129 34.1
EL10Ac2g02974 Beta vulgaris HOM05D007472 ORTHO05D009477 7.0e-07 59.7 183 30.6
DCAR_023498 Daucus carota HOM05D008239 ORTHO05D009800 1.2e-06 58.9 132 33.3


User provided reference genes

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