Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 9.4e-127 456.8 226 100.0
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 1.2e-113 413.3 222 91.4
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 3.2e-106 388.7 226 82.7
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 5.4e-106 387.9 210 88.1
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 1.2e-105 386.7 214 87.9
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.7e-104 382.9 214 84.6
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 3.0e-104 382.1 226 82.3
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 5.0e-104 381.3 211 86.7
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 1.9e-103 379.4 211 84.8
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 2.5e-103 379.0 224 81.2
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 3.3e-103 378.6 214 84.6
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 5.6e-103 377.9 211 84.4
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 5.6e-103 377.9 219 83.6
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 9.5e-103 377.1 211 84.4
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 9.5e-103 377.1 215 84.2
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 1.6e-102 376.3 224 80.4
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 1.6e-102 376.3 216 83.3
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 2.1e-102 375.9 216 82.9
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 8.1e-102 374.0 214 83.6
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 8.1e-102 374.0 212 83.0
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 1.8e-101 372.9 216 81.5
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 2.3e-101 372.5 211 82.9
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 4.0e-101 371.7 216 81.9
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 6.8e-101 370.9 214 82.2
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 6.8e-101 370.9 217 82.9
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.2e-100 370.2 217 82.9
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 1.5e-100 369.8 214 82.2
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 1.5e-100 369.8 224 78.1
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 2.0e-100 369.4 215 82.3
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 2.6e-100 369.0 216 81.0
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 3.4e-100 368.6 214 82.7
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 5.8e-100 367.9 235 77.0
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 5.8e-100 367.9 212 80.7
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 7.5e-100 367.5 212 82.1
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 7.5e-100 367.5 207 82.1
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 1.3e-99 366.7 217 82.5
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 1.3e-99 366.7 214 79.9
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 1.3e-99 366.7 214 79.9
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 1.7e-99 366.3 210 83.3
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 1.7e-99 366.3 225 77.3
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 2.2e-99 365.9 205 84.4
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 4.9e-99 364.8 214 81.3
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 6.4e-99 364.4 218 81.7
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 8.3e-99 364.0 214 79.0
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 1.1e-98 363.6 222 79.3
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 1.4e-98 363.2 219 79.0
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 1.9e-98 362.8 214 79.0
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 1.9e-98 362.8 216 79.2
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 2.4e-98 362.5 214 78.5
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.1e-98 361.7 217 81.6
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 5.4e-98 361.3 211 80.6
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 1.2e-97 360.1 220 81.4
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.7e-97 359.0 217 81.1
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 4.6e-97 358.2 210 80.5
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 3.0e-96 355.5 215 78.6
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 3.0e-96 355.5 211 78.7
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 8.6e-96 354.0 228 78.5
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 4.3e-95 351.7 226 77.0
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 5.6e-95 351.3 206 83.0
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 2.1e-94 349.4 211 79.6
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 1.1e-93 347.1 218 74.8
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 3.1e-93 345.5 221 74.7
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 4.4e-92 341.7 210 77.1
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 5.8e-92 341.3 209 75.1
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 1.3e-91 340.1 227 74.0
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 6.4e-91 337.8 215 76.3
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 6.4e-91 337.8 215 76.3
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 8.3e-91 337.4 215 76.3
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 8.3e-91 337.4 226 73.0
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 3.2e-90 335.5 214 78.0
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 4.1e-90 335.1 215 75.3
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 5.4e-90 334.7 204 78.9
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.6e-89 333.2 215 74.0
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 1.6e-89 333.2 216 72.2
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 2.7e-89 332.4 218 75.2
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 3.5e-89 332.0 218 75.2
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 1.3e-88 330.1 223 74.4
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 5.1e-88 328.2 215 74.9
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 6.2e-86 321.2 208 73.1
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 6.2e-86 321.2 178 82.0
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 3.1e-85 318.9 216 69.9
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 1.4e-82 310.1 174 80.5
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 2.4e-82 309.3 181 77.9
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 2.4e-82 309.3 250 63.2
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 1.6e-78 296.6 214 70.1
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 3.6e-78 295.4 180 78.3
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 2.2e-75 286.2 179 73.7
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 2.1e-73 279.6 209 68.9
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 3.3e-71 272.3 149 81.9
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.1e-69 265.8 163 77.9
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 2.0e-68 263.1 214 65.9
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 3.4e-68 262.3 214 56.5
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 4.6e-65 251.9 189 59.3
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 6.0e-65 251.5 215 60.5
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 6.2e-62 241.5 220 53.2
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 2.6e-60 236.1 140 79.3
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 7.6e-60 234.6 130 84.6
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 1.5e-55 220.3 126 80.2
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 6.3e-46 188.3 125 72.0
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 6.3e-46 188.3 115 78.3
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.2e-44 184.1 148 56.1
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 7.7e-44 181.4 102 80.4
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 4.3e-39 165.6 214 39.3
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 1.5e-36 157.1 126 66.7
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 1.3e-35 154.1 126 64.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.6e-33 147.1 214 33.6
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.4e-29 134.0 100 61.0
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 3.1e-29 132.9 76 77.6
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 5.9e-28 128.6 70 80.0
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 1.7e-27 127.1 173 33.5
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.7e-25 119.8 85 67.1
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 2.4e-21 106.7 67 67.2
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.7e-19 100.5 78 61.5
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.8e-19 99.4 51 82.4
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 7.2e-18 95.1 71 64.8
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 1.6e-12 77.4 58 75.9
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 1.2e-09 67.8 60 51.7
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 6.1e-09 65.5 93 47.3
BcaB01g00436 Brassica carinata HOM05D006727 ORTHO05D008408 3.7e-06 56.2 60 56.7


User provided reference genes

Program Settings