Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 4.6e-263 910.6 438 100.0
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.2e-236 822.0 437 88.6
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-233 812.8 434 88.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 8.5e-233 810.1 437 87.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 4.2e-232 807.7 436 86.2
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 7.2e-232 807.0 437 86.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 6.7e-230 800.4 438 85.2
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 8.8e-230 800.0 437 86.0
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.5e-229 799.3 438 84.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.3e-229 798.1 436 85.8
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 4.4e-229 797.7 452 83.8
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.4e-229 797.7 436 85.6
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.8e-228 795.0 438 84.2
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 4.8e-228 794.3 437 84.0
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 6.3e-228 793.9 435 85.7
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 7.0e-227 790.4 434 85.0
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.2e-226 789.6 437 84.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-226 789.3 434 84.6
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-226 789.3 434 84.6
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.6e-226 789.3 438 84.7
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 5.9e-226 787.3 436 84.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.0e-225 786.6 438 83.6
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.0e-225 786.6 437 83.5
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.3e-225 786.2 438 84.0
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.7e-225 785.8 438 84.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.7e-225 785.8 437 84.4
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.9e-225 785.0 438 82.9
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.9e-225 785.0 437 82.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.5e-225 783.9 438 84.7
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.1e-224 783.1 438 83.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.1e-224 783.1 435 83.2
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.5e-224 782.7 438 83.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.5e-224 782.7 438 82.0
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.2e-224 781.6 436 83.0
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.2e-224 781.6 435 83.0
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 7.2e-224 780.4 436 83.3
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 7.2e-224 780.4 494 76.1
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.2e-224 780.4 437 83.3
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.2e-223 779.6 436 83.0
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.6e-223 779.2 431 84.2
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.7e-223 778.5 441 82.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.8e-222 775.8 438 84.5
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 8.8e-222 773.5 437 81.7
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.5e-221 772.7 431 81.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.6e-221 771.9 438 82.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.4e-221 771.5 433 82.9
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 7.5e-221 770.4 436 81.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.8e-221 770.0 433 82.4
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.3e-220 769.6 428 84.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.2e-220 768.8 509 74.3
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.7e-220 768.1 435 82.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 8.3e-220 766.9 433 82.4
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 8.3e-220 766.9 437 81.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.4e-219 765.4 433 82.2
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 5.4e-219 764.2 437 81.2
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 9.1e-219 763.5 435 81.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 9.1e-219 763.5 473 76.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.2e-218 763.1 433 82.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.0e-217 760.0 434 82.3
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 2.5e-216 755.4 438 79.7
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.3e-216 755.0 438 80.8
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 4.2e-216 754.6 413 86.4
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 7.2e-216 753.8 392 91.8
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-215 753.1 429 81.6
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.6e-215 752.7 435 80.9
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.1e-215 752.3 434 80.2
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.1e-215 752.3 434 80.2
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 3.6e-215 751.5 436 80.0
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 4.7e-215 751.1 438 79.7
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 8.0e-215 750.4 434 80.0
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 8.0e-215 750.4 435 80.2
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.0e-214 750.0 434 80.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-214 749.2 429 80.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.3e-214 748.8 445 78.7
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.0e-214 748.0 436 79.8
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 5.2e-214 747.7 432 79.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 6.8e-214 747.3 439 79.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.6e-213 745.3 435 78.9
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 9.8e-213 743.4 435 79.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-212 743.0 444 78.8
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.3e-212 743.0 435 79.1
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.3e-212 743.0 440 80.0
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.2e-212 742.3 435 78.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 9.2e-211 736.9 439 78.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 9.2e-211 736.9 417 83.2
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.3e-209 732.3 439 77.7
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.3e-209 732.3 524 69.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 3.8e-209 731.5 434 79.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.3e-208 727.2 437 77.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.3e-206 722.2 405 82.5
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.0e-205 719.2 404 83.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 9.8e-205 716.8 402 82.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.4e-203 712.2 435 77.7
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.8e-199 698.7 434 76.0
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.7e-196 688.3 438 75.6
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.5e-192 675.6 427 74.7
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 3.6e-191 671.8 440 72.0
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.2e-189 666.8 438 75.8
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.0e-189 666.0 434 72.4
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.6e-189 665.6 441 71.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.4e-189 664.8 437 70.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.0e-185 652.1 427 71.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 9.5e-184 647.1 426 71.6
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.5e-181 639.8 437 67.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 5.8e-181 637.9 339 87.3
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.9e-180 635.6 341 86.5
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.9e-179 632.9 436 67.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 9.2e-179 630.6 427 69.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 7.8e-178 627.5 330 87.9
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.6e-175 618.6 433 66.7
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.4e-174 615.9 339 84.7
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.1e-170 602.8 387 74.4
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-169 600.1 440 70.0
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.1e-167 592.8 432 64.4
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.1e-167 590.9 441 63.0
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.8e-166 589.7 441 63.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.3e-164 583.6 355 78.3
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.9e-161 572.0 439 63.6
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 4.5e-157 558.5 426 60.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 7.4e-152 541.2 293 86.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.3e-145 519.6 427 59.3
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.1e-145 518.5 337 72.1
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.7e-145 518.1 350 70.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 7.4e-136 488.0 381 64.3
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 6.7e-129 464.9 443 51.2
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.2e-111 406.8 352 59.4
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.7e-111 406.0 224 83.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.9e-108 396.4 243 77.0
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 5.9e-93 345.5 228 71.9
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.0e-76 291.6 189 69.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.1e-74 283.9 157 84.7
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.1e-74 283.9 176 75.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.0e-68 265.0 145 85.5
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 8.6e-68 261.9 197 68.0
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.9e-60 236.5 235 56.2
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.1e-60 236.1 134 83.6
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.6e-51 205.3 112 83.9
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.0e-49 198.7 107 81.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-41 174.5 137 65.0
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.9e-35 154.5 88 79.5
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-34 151.4 93 75.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 9.0e-33 145.6 204 39.7
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-32 145.2 165 48.5
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.2e-31 141.0 82 80.5
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.3e-28 131.0 78 78.2
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 6.5e-23 112.8 67 71.6
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.6e-21 107.1 258 32.2
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 6.1e-21 106.3 63 79.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.9e-20 103.6 71 63.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.1e-19 102.1 57 73.7
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.7e-15 88.2 121 44.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 36 91.7
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.7e-13 80.1 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.2e-10 71.2 82 51.2
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 6.3e-10 69.7 35 88.6
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 7.0e-09 66.2 237 25.7
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 9.1e-09 65.9 69 53.6
Lsat_1_v5_gn_8_24621 Lactuca sativa HOM05D002051 ORTHO05D002041 1.7e-07 61.6 383 22.5
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 8.5e-07 59.3 35 74.3


User provided reference genes

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