Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 2.3e-165 585.5 292 100.0
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 4.7e-70 268.9 153 88.2
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 9.2e-58 228.0 154 72.7
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 9.2e-58 228.0 154 72.7
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.0e-56 224.6 153 73.2
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.5e-55 220.7 150 72.0
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 5.2e-53 212.2 154 68.8
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 9.9e-52 208.0 159 64.2
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.7e-51 207.2 157 63.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.9e-51 206.5 156 67.3
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.9e-50 203.8 158 65.2
Dinv21787 Davidia involucrata HOM05D004587 ORTHO05D181288 2.4e-50 203.4 115 85.2
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 4.1e-50 202.6 165 62.4
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 5.4e-50 202.2 165 62.4
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.7e-49 199.9 158 63.9
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.7e-49 199.9 154 66.9
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 7.8e-49 198.4 161 62.1
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.3e-48 197.6 155 63.9
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.9e-48 196.1 157 64.3
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.1e-48 195.7 171 59.6
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 6.6e-48 195.3 164 61.6
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.1e-47 194.5 157 59.9
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.5e-47 194.1 164 57.3
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.9e-47 193.7 154 66.9
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.5e-47 193.4 151 63.6
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 3.3e-47 193.0 164 59.1
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.6e-47 192.2 163 62.6
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.2e-46 191.0 157 60.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.8e-46 189.9 151 62.3
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 6.2e-46 188.7 156 61.5
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 6.2e-46 188.7 163 55.8
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.1e-45 188.0 150 60.7
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.1e-45 186.4 163 54.6
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 5.2e-45 185.7 151 62.9
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 6.9e-45 185.3 158 60.1
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 8.9e-45 184.9 155 59.4
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 8.9e-45 184.9 161 57.8
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.5e-44 184.1 141 64.5
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.4e-44 183.0 161 59.6
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 4.4e-44 182.6 159 62.9
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.4e-44 182.6 154 60.4
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 7.6e-44 181.8 150 60.0
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 9.9e-44 181.4 163 58.3
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 9.9e-44 181.4 160 57.5
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.3e-43 181.0 197 49.7
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.3e-43 181.0 155 61.3
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 2.9e-43 179.9 160 56.9
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 2.9e-43 179.9 162 58.0
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 4.9e-43 179.1 157 56.1
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.9e-43 179.1 160 56.9
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.1e-42 177.9 157 55.4
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-42 177.9 150 58.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.9e-42 177.2 157 57.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.9e-42 177.2 165 55.8
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 5.4e-42 175.6 157 54.8
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.2e-41 174.5 163 54.6
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.2e-41 174.5 168 54.2
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 4.6e-41 172.6 156 57.1
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 7.8e-41 171.8 164 54.3
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.3e-40 171.0 159 54.7
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 2.3e-40 170.2 164 56.1
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 3.9e-40 169.5 152 56.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 8.7e-40 168.3 156 51.3
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 8.7e-40 168.3 163 52.1
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.9e-39 167.2 156 51.9
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.5e-39 166.8 161 54.0
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.5e-39 166.8 159 54.7
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 4.3e-39 166.0 163 51.5
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.3e-39 166.0 158 54.4
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 9.6e-39 164.9 158 54.4
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 2.1e-38 163.7 159 51.6
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 2.1e-38 163.7 244 40.6
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.8e-38 163.3 165 55.2
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.8e-38 163.3 158 53.2
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 2.4e-37 160.2 267 38.2
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.0e-37 158.3 150 54.7
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 9.0e-37 158.3 150 54.7
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.5e-36 157.5 167 48.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 2.0e-36 157.1 159 52.2
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.0e-36 157.1 160 51.2
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.0e-36 157.1 155 53.5
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 2.6e-36 156.8 159 50.9
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 2.6e-36 156.8 159 50.9
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.6e-36 156.8 223 42.6
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 9.9e-36 154.8 158 51.3
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 9.9e-36 154.8 159 52.8
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 9.9e-36 154.8 193 46.6
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.3e-35 154.5 200 44.5
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-35 154.1 158 51.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 2.2e-35 153.7 173 51.4
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.8e-35 152.9 157 51.6
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 8.4e-35 151.8 154 51.3
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 8.4e-35 151.8 162 50.6
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 1.9e-34 150.6 153 52.9
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.9e-34 150.6 194 44.8
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.9e-34 150.6 157 47.1
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.4e-34 150.2 150 56.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.2e-34 149.8 158 50.0
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 9.3e-34 148.3 166 50.0
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 9.3e-34 148.3 170 49.4
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.6e-33 147.5 158 49.4
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.1e-33 147.1 157 47.8
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 2.1e-33 147.1 221 41.6
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.0e-32 144.8 161 49.1
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.0e-32 144.8 158 49.4
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.3e-32 144.4 162 46.9
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.5e-31 141.0 158 50.0
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.5e-31 141.0 143 55.2
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.5e-31 140.2 158 46.2
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 2.5e-31 140.2 111 61.3
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.5e-31 140.2 168 47.0
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 5.6e-31 139.0 167 47.9
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.4e-29 133.7 167 47.3
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.2e-28 131.3 154 50.0
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.5e-28 129.4 147 49.7
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 9.9e-28 128.3 81 71.6
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 9.9e-28 128.3 172 43.0
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.7e-27 127.5 149 49.7
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 4.9e-27 125.9 114 56.1
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 4.9e-27 125.9 150 51.3
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.1e-25 120.6 79 70.9
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.0e-25 119.0 166 42.2
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 7.9e-25 118.6 156 46.8
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.9e-25 118.6 157 45.9
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.0e-24 118.2 156 46.8
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.3e-24 117.9 159 45.3
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-24 117.1 156 44.9
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.0e-24 116.7 153 48.4
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 3.0e-24 116.7 156 44.9
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 6.7e-24 115.5 149 45.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.9e-23 114.0 170 42.4
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.5e-23 113.6 155 43.9
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.5e-23 113.6 155 43.9
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 3.3e-23 113.2 146 45.9
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.3e-23 113.2 147 47.6
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.3e-23 112.8 156 43.6
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 7.4e-23 112.1 153 47.1
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 2.8e-22 110.2 153 46.4
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 2.8e-22 110.2 152 46.1
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 2.8e-22 110.2 153 46.4
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 2.8e-22 110.2 81 61.7
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 2.4e-21 107.1 112 53.6
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.2e-20 104.8 151 43.0
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.4e-20 103.2 160 41.9
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.8e-19 99.8 68 70.6
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 3.8e-19 99.8 149 42.3
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 5.5e-18 95.9 80 61.2
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 9.3e-18 95.1 73 63.0
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 9.7e-15 85.1 77 51.9
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 2.8e-14 83.6 88 52.3
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.8e-14 82.8 80 53.8
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 2.4e-13 80.5 81 46.9
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.3e-13 79.3 89 46.1
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.3e-11 74.7 96 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.7e-11 74.3 101 41.6
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.2e-11 73.9 134 37.3
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 5.0e-11 72.8 44 68.2
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.6e-09 66.6 44 70.5
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 6.1e-09 65.9 87 48.3
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 3.9e-08 63.2 88 45.5


User provided reference genes

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