Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 0.0e+00 1396.7 716 100.0
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 0.0e+00 1085.9 720 78.5
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.4e-309 1065.8 724 77.1
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.5e-300 1034.6 721 75.3
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 3.9e-291 1004.6 721 73.2
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 6.0e-284 980.7 722 71.7
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.6e-281 972.6 722 72.3
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 2.0e-279 965.7 796 66.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 1.7e-278 962.6 695 72.9
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.9e-278 961.8 721 70.7
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.6e-268 929.5 721 68.5
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 3.0e-267 925.2 825 63.3
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 8.1e-265 917.1 723 67.2
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.1e-265 917.1 730 67.0
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 3.1e-264 915.2 723 68.2
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 3.1e-264 915.2 721 67.8
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.5e-263 912.9 721 68.1
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.4e-263 911.8 725 68.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 1.3e-262 909.8 721 68.9
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 3.8e-262 908.3 721 68.0
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.9e-261 906.0 722 67.7
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 4.2e-261 904.8 707 67.2
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 5.4e-261 904.4 721 67.3
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.6e-260 901.4 720 67.6
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 4.6e-260 901.4 721 67.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 6.0e-260 901.0 727 65.1
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.5e-258 896.3 717 65.8
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.9e-258 896.0 721 67.4
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.6e-257 892.9 717 65.8
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.4e-256 889.0 730 66.7
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 4.0e-256 888.3 722 66.1
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 7.6e-255 884.0 722 65.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.6e-255 884.0 721 67.0
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-254 883.2 717 65.4
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 3.8e-254 881.7 721 66.4
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.4e-253 877.9 733 66.0
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.9e-251 871.7 722 65.0
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.1e-250 870.2 728 65.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.1e-250 870.2 747 63.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 5.6e-250 867.8 720 65.3
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.1e-248 863.6 737 63.5
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 5.3e-248 861.3 721 65.3
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 7.6e-247 857.4 723 64.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 3.8e-246 855.1 723 66.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.8e-246 855.1 709 65.4
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 4.9e-246 854.7 720 65.4
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 6.4e-246 854.4 718 64.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.1e-245 850.9 721 66.3
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 7.1e-245 850.9 720 64.0
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.2e-244 850.1 723 65.0
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.2e-244 850.1 726 64.0
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 2.7e-244 849.0 723 64.7
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.6e-244 848.2 718 64.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.3e-243 846.7 696 65.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.9e-243 845.1 721 65.3
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 6.7e-243 844.3 719 64.5
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.7e-241 838.6 719 63.4
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.8e-240 836.3 719 63.1
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.4e-240 835.9 725 63.3
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 3.1e-240 835.5 723 62.2
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.2e-239 833.6 715 63.9
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.6e-239 832.4 724 63.7
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.5e-239 831.6 727 62.7
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 7.6e-239 830.9 718 63.1
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.0e-238 830.5 723 62.4
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.4e-237 826.6 723 63.2
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.2e-236 823.5 720 62.8
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 8.7e-235 817.4 722 62.2
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 9.6e-234 813.9 723 63.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.8e-233 812.4 697 64.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.4e-232 809.3 719 62.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 3.1e-232 808.9 734 61.3
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.5e-231 806.6 733 61.0
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.0e-230 803.9 803 58.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.9e-230 802.4 803 58.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.4e-229 800.0 720 61.9
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 4.6e-228 795.0 604 69.7
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 2.8e-225 785.8 720 59.7
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 4.5e-223 778.5 723 60.3
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.9e-223 778.1 722 59.6
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.1e-221 773.9 716 61.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 3.2e-221 772.3 720 59.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.2e-221 772.3 720 59.0
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 4.6e-220 768.5 722 58.7
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.0e-219 765.8 720 58.6
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.7e-218 761.5 736 58.4
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 5.3e-216 755.0 720 58.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.4e-215 752.3 707 60.3
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 7.7e-215 751.1 693 60.6
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.0e-214 750.7 558 71.9
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.4e-213 746.9 724 60.2
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 6.7e-211 738.0 693 58.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.3e-209 733.8 718 57.5
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.0e-207 726.5 770 53.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 5.9e-207 724.9 670 59.6
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 7.7e-207 724.5 714 58.4
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.1e-205 720.7 651 59.6
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 4.7e-204 715.3 718 57.1
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 3.0e-203 712.6 693 58.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 4.0e-203 712.2 714 57.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 4.0e-203 712.2 714 57.4
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 8.8e-203 711.1 693 58.2
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-202 710.7 697 58.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 5.7e-202 708.4 713 57.4
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 5.7e-202 708.4 693 58.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-201 707.2 693 57.9
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.8e-201 706.1 725 54.9
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 5.9e-199 698.4 666 58.9
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.9e-198 696.0 713 56.7
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.4e-195 687.2 697 56.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.8e-193 679.5 668 57.8
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.5e-190 668.3 553 64.9
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.6e-188 663.7 659 57.1
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-184 651.0 666 56.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 2.4e-184 649.8 727 52.7
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 3.5e-183 646.0 710 54.2
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-181 640.6 637 57.9
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 8.3e-177 624.8 923 43.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 4.1e-176 622.5 719 50.9
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.4e-176 622.1 452 72.1
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.3e-171 606.7 755 48.6
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.6e-165 585.5 721 49.2
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 8.1e-164 581.6 660 52.9
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 3.1e-163 579.7 720 48.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.5e-162 577.4 715 49.9
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.1e-160 571.2 731 49.8
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.6e-159 567.4 672 51.8
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.6e-156 557.4 657 50.5
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 9.6e-149 531.6 611 49.8
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 1.6e-132 477.6 579 50.8
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 4.0e-131 473.0 432 60.2
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.0e-127 459.1 430 58.4
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 6.5e-121 439.1 717 39.7
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.0e-118 431.8 548 47.1
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.8e-102 377.9 663 37.9
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 9.7e-101 372.1 641 36.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.7e-92 344.7 440 49.1
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.3e-83 313.2 256 68.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.0e-81 308.9 512 38.3
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.6e-65 253.1 285 53.3
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.9e-60 236.9 216 60.2
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.4e-59 234.6 195 67.2
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 7.0e-51 206.5 173 66.5
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.0e-41 176.0 167 55.7
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 5.1e-41 173.7 138 67.4
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 3.8e-36 157.5 183 48.6
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 4.3e-32 144.1 204 46.1
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 4.3e-32 144.1 204 46.1
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-27 128.3 185 45.4
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-27 128.3 185 45.4
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.4e-22 111.7 101 58.4
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 5.3e-22 110.5 324 28.7
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 7.1e-19 100.1 203 38.4
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 9.3e-19 99.8 176 40.3
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 3.5e-18 97.8 104 55.8
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 6.7e-17 93.6 60 78.3
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 5.6e-16 90.5 105 46.7
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 3.1e-14 84.7 176 35.2
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.4e-11 75.9 194 33.5
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.4e-11 75.9 55 61.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.4e-11 75.1 85 56.5
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-11 74.7 245 26.9
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 9.3e-11 73.2 55 63.6
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 2.7e-10 71.6 46 80.4
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 1.1e-08 66.2 37 89.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.5e-08 65.9 78 44.9
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-07 62.4 47 59.6
Lsat_1_v5_gn_7_26281 Lactuca sativa HOM05D001585 ORTHO05D036438 5.3e-06 57.4 66 54.5


User provided reference genes

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