Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.6e-191 671.8 313 100.0
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 3.9e-123 445.3 275 76.0
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.8e-120 436.4 275 75.3
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.5e-119 433.3 274 73.7
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 3.6e-116 422.2 279 72.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 3.3e-114 415.6 296 65.5
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.4e-112 410.2 264 72.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.4e-112 409.5 275 71.3
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.0e-111 406.4 275 68.7
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 7.7e-111 404.4 273 70.3
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 2.2e-110 402.9 273 67.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 2.2e-110 402.9 283 66.4
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 6.5e-110 401.4 277 69.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 2.5e-109 399.4 275 68.7
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.6e-108 396.7 283 65.7
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.1e-108 396.4 274 66.8
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.7e-108 396.0 297 65.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.4e-107 393.7 274 66.4
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.8e-107 393.3 275 66.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.8e-107 393.3 335 57.6
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 3.0e-107 392.5 283 64.7
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.8e-107 391.0 276 67.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 2.0e-106 389.8 282 67.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 3.3e-106 389.0 283 66.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 5.7e-106 388.3 276 67.0
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.3e-105 387.1 283 64.7
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 8.2e-105 384.4 276 67.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.1e-104 384.0 275 66.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.2e-103 380.6 275 65.1
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.7e-103 379.4 303 61.4
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.7e-102 376.7 275 67.3
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.7e-102 376.7 281 63.0
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 6.5e-102 374.8 273 65.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.1e-101 374.0 274 63.1
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 7.2e-101 371.3 274 64.2
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 9.4e-101 370.9 274 64.6
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 1.6e-100 370.2 267 66.3
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 2.1e-100 369.8 274 64.6
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.7e-100 369.4 275 65.1
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.7e-100 369.4 275 65.1
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 3.6e-100 369.0 283 59.7
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 8.0e-100 367.9 274 63.5
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.4e-99 367.1 278 62.9
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.8e-99 366.7 275 61.8
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.3e-99 366.3 295 58.6
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.3e-99 366.3 281 62.6
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 5.2e-99 365.2 273 62.6
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 8.8e-99 364.4 274 64.6
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.5e-98 363.6 274 61.7
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.5e-98 363.6 283 61.1
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.8e-97 359.4 274 62.0
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 2.8e-97 359.4 275 61.5
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.7e-97 359.0 326 55.2
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 6.3e-97 358.2 278 62.2
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 6.3e-97 358.2 273 61.2
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.4e-96 357.1 275 62.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.4e-96 356.3 274 63.9
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 3.1e-96 355.9 273 62.3
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 9.1e-96 354.4 277 61.0
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 2.0e-95 353.2 311 54.3
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.0e-95 353.2 274 64.2
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.7e-95 352.8 275 61.5
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 3.5e-95 352.4 277 60.3
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.5e-95 352.1 274 60.9
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.0e-94 350.9 275 60.7
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.3e-94 349.7 286 58.0
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.9e-94 349.4 275 63.6
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 5.0e-94 348.6 273 60.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 5.0e-94 348.6 241 65.6
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.9e-93 346.7 290 61.4
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 3.3e-93 345.9 277 60.3
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 3.3e-93 345.9 277 60.3
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.5e-93 345.1 274 61.7
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 2.3e-91 339.7 285 57.5
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.0e-91 339.3 275 59.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 2.0e-90 336.7 285 59.3
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 8.3e-89 331.3 274 56.9
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.6e-87 327.0 278 59.0
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.5e-85 320.5 274 58.4
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.7e-81 305.8 231 63.6
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.3e-78 297.4 255 55.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.3e-77 292.7 282 52.1
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 5.4e-72 275.4 276 50.4
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.2e-72 274.6 282 52.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 6.6e-70 268.5 274 49.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 7.3e-69 265.0 201 65.2
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.4e-66 256.1 282 46.1
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.9e-65 253.1 279 50.5
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 9.2e-64 248.1 249 52.2
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 8.6e-62 241.5 286 46.2
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.5e-58 230.7 244 44.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.7e-57 227.3 295 42.4
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 8.4e-57 224.9 261 42.9
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 3.1e-51 206.5 205 51.2
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 5.3e-51 205.7 294 40.5
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 5.4e-48 195.7 274 40.9
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 7.1e-48 195.3 272 40.4
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.1e-46 189.1 145 61.4
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 5.3e-43 179.1 165 56.4
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.5e-39 166.4 112 70.5
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.1e-38 162.5 202 45.5
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.9e-37 160.6 187 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.7e-36 156.4 157 48.4
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 6.4e-33 145.6 198 37.9
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.5e-24 115.9 74 71.6
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 9.3e-24 115.2 231 34.6
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 9.3e-24 115.2 73 71.2
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 6.1e-23 112.5 228 32.5
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 1.5e-21 107.8 217 34.1
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.9e-21 107.5 227 33.5
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.9e-21 107.5 222 34.2
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 5.7e-21 105.9 241 32.0
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 5.7e-21 105.9 241 32.0
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 7.4e-21 105.5 222 33.8
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 9.7e-21 105.1 231 32.5
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 9.7e-21 105.1 222 33.8
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.3e-20 104.8 222 33.3
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.8e-20 103.6 89 51.7
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 2.8e-20 103.6 226 32.7
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 6.3e-20 102.4 233 31.8
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 6.3e-20 102.4 226 32.7
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 8.2e-20 102.1 247 32.0
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 8.2e-20 102.1 88 54.5
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 8.2e-20 102.1 88 54.5
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 8.2e-20 102.1 222 32.9
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.4e-19 101.3 222 33.3
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.8e-19 100.9 225 33.3
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.4e-19 100.5 226 31.9
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 3.1e-19 100.1 243 32.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.1e-19 100.1 222 32.0
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 4.1e-19 99.8 243 30.9
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 4.1e-19 99.8 226 32.3
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 4.1e-19 99.8 225 31.1
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 4.1e-19 99.8 223 32.7
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 5.3e-19 99.4 221 33.5
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 5.3e-19 99.4 228 31.6
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.3e-19 99.4 226 32.7
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.3e-19 99.4 226 32.3
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 1.2e-18 98.2 226 32.7
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.5e-18 97.8 225 32.9
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.5e-18 97.8 226 31.9
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 2.0e-18 97.4 226 32.7
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.0e-18 97.4 227 30.8
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 2.0e-18 97.4 120 44.2
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.6e-18 97.1 226 32.3
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 3.4e-18 96.7 226 30.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 4.5e-18 96.3 228 32.9
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 5.9e-18 95.9 226 31.4
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 5.9e-18 95.9 226 31.4
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 7.7e-18 95.5 247 30.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 1.0e-17 95.1 226 31.4
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.0e-17 95.1 225 31.6
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.0e-17 95.1 225 31.6
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.0e-17 95.1 222 32.0
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.0e-17 95.1 225 31.6
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.3e-17 94.7 222 31.5
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.7e-17 94.4 58 70.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.7e-17 94.4 224 29.5
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.7e-17 94.4 222 31.5
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.8e-17 93.2 221 30.8
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 8.5e-17 92.0 225 31.1
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 8.5e-17 92.0 63 65.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 8.5e-17 92.0 226 31.4
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 8.5e-17 92.0 226 31.4
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 8.5e-17 92.0 225 30.7
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.9e-16 90.9 224 31.2
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.2e-16 89.7 225 31.6
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 4.2e-16 89.7 224 30.8
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 5.5e-16 89.4 197 32.5
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 7.2e-16 89.0 222 31.1
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 3.6e-15 86.7 225 29.3
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 7.9e-15 85.5 221 30.8
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.8e-14 84.3 226 31.4
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.2e-10 71.6 102 40.2
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 7.7e-10 68.9 99 37.4
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 1.1e-08 65.1 35 80.0
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 6.7e-06 55.8 38 63.2
Cre02.g093401 Chlamydomonas reinhardtii HOM05D001404 ORTHO05D140787 8.8e-06 55.5 52 50.0


User provided reference genes

Program Settings