Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 5.0e-64 247.7 131 100.0
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 7.1e-26 120.9 142 50.7
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.9e-24 115.2 106 59.4
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 8.7e-24 114.0 109 58.7
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.3e-22 110.2 105 58.1
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.6e-22 109.8 106 56.6
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 1.6e-22 109.8 100 60.0
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 3.7e-22 108.6 106 57.5
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 4.8e-22 108.2 100 58.0
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 1.4e-21 106.7 96 60.4
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 4.0e-21 105.1 107 56.1
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 2.0e-20 102.8 104 55.8
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 3.4e-20 102.1 106 56.6
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 4.5e-20 101.7 109 50.5
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 1.7e-19 99.8 106 55.7
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 3.8e-19 98.6 96 54.2
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 6.5e-19 97.8 91 59.3
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 1.1e-18 97.1 108 54.6
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 4.2e-18 95.1 97 48.5
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.6e-17 93.2 97 46.4
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 2.1e-17 92.8 102 50.0
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.1e-17 92.8 97 52.6
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 3.5e-17 92.0 95 56.8
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 7.9e-17 90.9 105 52.4
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 1.8e-16 89.7 104 51.0
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.8e-16 89.7 105 46.7
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.8e-16 89.7 102 46.1
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 1.8e-16 89.7 95 55.8
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 2.3e-16 89.4 102 52.0
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.5e-15 86.7 95 45.3
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 1.5e-15 86.7 95 45.3
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 1.5e-15 86.7 105 45.7
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.5e-15 86.7 102 45.1
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 1.5e-15 86.7 101 45.5
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 4.3e-15 85.1 103 47.6
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 5.7e-15 84.7 99 43.4
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 5.7e-15 84.7 99 43.4
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 7.4e-15 84.3 97 45.4
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 9.6e-15 84.0 97 43.3
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 9.6e-15 84.0 98 49.0
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 1.6e-14 83.2 143 39.9
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 1.6e-14 83.2 91 51.6
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 2.1e-14 82.8 102 43.1
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 2.8e-14 82.4 99 45.5
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.7e-14 82.0 102 44.1
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.7e-14 82.0 102 44.1
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 3.7e-14 82.0 95 46.3
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 4.8e-14 81.6 102 47.1
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 4.8e-14 81.6 99 49.5
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 6.3e-14 81.3 99 41.4
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 6.3e-14 81.3 98 43.9
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 8.2e-14 80.9 103 43.7
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 8.2e-14 80.9 97 44.3
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 8.2e-14 80.9 103 43.7
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 8.2e-14 80.9 103 43.7
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.1e-13 80.5 96 44.8
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 1.1e-13 80.5 100 46.0
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 1.1e-13 80.5 93 46.2
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.1e-13 80.5 101 45.5
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 1.4e-13 80.1 100 53.0
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 2.4e-13 79.3 103 41.7
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 3.1e-13 79.0 109 46.8
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 3.1e-13 79.0 102 43.1
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 4.1e-13 78.6 97 43.3
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 4.1e-13 78.6 93 43.0
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 5.3e-13 78.2 111 42.3
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 5.3e-13 78.2 104 43.3
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 5.3e-13 78.2 99 44.4
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 5.3e-13 78.2 95 49.5
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 6.9e-13 77.8 103 41.7
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 6.9e-13 77.8 103 40.8
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 6.9e-13 77.8 102 43.1
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 6.9e-13 77.8 99 45.5
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 9.0e-13 77.4 101 42.6
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 1.2e-12 77.0 101 47.5
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.0e-12 76.3 102 43.1
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 2.0e-12 76.3 99 40.4
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 2.0e-12 76.3 102 40.2
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 2.0e-12 76.3 101 41.6
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.6e-12 75.9 90 44.4
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 2.6e-12 75.9 108 47.2
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.4e-12 75.5 94 43.6
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 3.4e-12 75.5 99 44.4
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 3.4e-12 75.5 109 45.0
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 4.5e-12 75.1 92 41.3
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 4.5e-12 75.1 97 39.2
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 4.5e-12 75.1 103 40.8
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.5e-12 75.1 98 48.0
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 5.9e-12 74.7 97 41.2
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 5.9e-12 74.7 98 48.0
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.9e-12 74.7 98 48.0
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.9e-12 74.7 98 48.0
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 7.6e-12 74.3 93 46.2
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 7.6e-12 74.3 102 42.2
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 1.0e-11 73.9 97 39.2
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.0e-11 73.9 102 42.2
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 1.3e-11 73.6 97 44.3
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 1.3e-11 73.6 100 45.0
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.3e-11 73.6 103 43.7
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.7e-11 73.2 100 44.0
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 1.7e-11 73.2 102 47.1
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 2.2e-11 72.8 97 45.4
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.2e-11 72.8 97 42.3
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 2.2e-11 72.8 90 44.4
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 2.9e-11 72.4 83 42.2
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.9e-11 72.4 97 43.3
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 5.0e-11 71.6 97 42.3
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 6.5e-11 71.2 96 41.7
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 8.4e-11 70.9 98 44.9
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 8.4e-11 70.9 91 47.3
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 8.4e-11 70.9 103 42.7
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 1.1e-10 70.5 103 40.8
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 1.1e-10 70.5 109 39.4
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.4e-10 70.1 100 43.0
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.5e-10 69.3 97 41.2
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 2.5e-10 69.3 94 45.7
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 3.2e-10 68.9 102 43.1
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 4.2e-10 68.6 98 38.8
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.2e-10 68.6 94 42.6
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 4.2e-10 68.6 92 47.8
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 5.5e-10 68.2 95 40.0
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 5.5e-10 68.2 94 42.6
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.5e-10 68.2 94 42.6
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 5.5e-10 68.2 91 46.2
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 5.5e-10 68.2 97 48.5
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 5.5e-10 68.2 127 34.6
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 7.2e-10 67.8 91 46.2
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.6e-09 66.6 91 41.8
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 2.1e-09 66.2 98 42.9
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 2.1e-09 66.2 103 44.7
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.7e-09 65.9 97 40.2
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.7e-09 65.9 92 42.4
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 6.1e-09 64.7 88 39.8
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 6.1e-09 64.7 88 39.8
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 6.1e-09 64.7 97 39.2
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 7.9e-09 64.3 105 40.0
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 7.9e-09 64.3 92 46.7
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 1.0e-08 63.9 94 41.5
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 3.0e-08 62.4 92 46.7
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 6.7e-08 61.2 106 37.7
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.1e-07 60.5 146 34.2
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.9e-07 59.7 70 47.1
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.9e-07 59.7 96 38.5
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 9.7e-07 57.4 84 40.5
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 1.3e-06 57.0 107 37.4
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 4.8e-06 55.1 96 37.5


User provided reference genes

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