Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 0.0e+00 1192.6 626 100.0
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 6.8e-284 980.3 621 84.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 9.8e-283 976.5 618 85.0
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.1e-281 973.0 618 84.3
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.4e-281 972.6 623 84.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 4.1e-273 944.5 620 83.5
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.7e-266 922.5 622 79.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.9e-265 919.1 622 79.6
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.4e-265 918.7 622 79.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.5e-262 909.4 649 73.3
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.1e-260 903.3 622 76.4
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.4e-260 902.9 739 70.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.2e-259 899.8 623 78.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 3.8e-258 894.8 622 78.1
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 6.4e-258 894.0 622 79.6
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 6.4e-258 894.0 622 79.6
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 3.5e-256 888.3 622 77.7
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 6.0e-256 887.5 622 78.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.7e-255 885.9 622 77.7
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 6.6e-255 884.0 622 77.7
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.5e-254 882.9 622 77.3
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.9e-254 882.5 624 77.1
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.3e-253 879.8 625 77.4
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.6e-253 878.2 617 77.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.4e-249 866.3 624 76.3
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.2e-249 864.8 643 75.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 7.1e-249 864.0 624 75.3
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 9.6e-246 853.6 619 75.9
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.4e-244 849.7 631 73.5
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 4.0e-244 848.2 579 78.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.5e-243 846.3 617 76.5
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.5e-243 846.3 624 74.8
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.4e-243 845.1 622 74.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 5.8e-243 844.3 622 75.1
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 9.9e-243 843.6 619 75.3
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.9e-242 842.0 613 76.2
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 4.9e-242 841.3 621 74.9
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 6.4e-242 840.9 575 79.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.0e-240 834.3 625 74.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 9.6e-238 827.0 619 74.2
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.8e-237 825.5 684 69.4
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.7e-237 825.1 619 75.6
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-236 823.5 619 73.7
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.1e-236 823.5 624 74.5
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.9e-236 820.8 625 73.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 9.0e-236 820.5 628 74.4
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 4.5e-235 818.1 562 80.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.8e-235 817.8 624 72.1
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 7.6e-235 817.4 601 76.4
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.2e-234 815.8 621 73.4
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.9e-234 814.7 624 72.0
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 4.2e-233 811.6 623 72.4
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 9.3e-233 810.4 603 74.8
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.3e-231 805.8 544 80.7
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 6.7e-231 804.3 563 79.6
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.5e-230 802.4 622 71.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.3e-230 801.6 604 74.5
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.6e-229 799.7 625 71.5
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 6.3e-229 797.7 633 70.9
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.6e-227 792.3 618 71.8
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 3.4e-227 792.0 623 72.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 7.6e-227 790.8 597 74.2
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-226 790.0 622 71.9
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 7.9e-224 780.8 628 67.8
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-223 780.0 593 73.4
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.1e-223 778.1 496 85.9
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.5e-222 776.5 683 64.0
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.2e-219 766.9 561 75.4
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.4e-217 760.0 561 75.0
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.4e-215 753.4 527 78.7
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 5.1e-215 751.5 581 72.3
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 5.9e-211 738.0 566 73.5
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 3.8e-210 735.3 617 66.3
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 9.7e-206 720.7 635 66.3
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 5.3e-204 714.9 614 67.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.0e-202 710.7 621 62.8
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.8e-202 708.8 570 70.7
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 6.5e-202 708.0 604 63.6
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 7.2e-201 704.5 551 72.1
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.5e-198 696.8 619 62.4
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 4.4e-198 695.3 549 72.1
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 7.5e-198 694.5 568 69.9
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 9.7e-198 694.1 545 71.9
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.8e-197 692.6 553 70.5
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-197 692.6 553 70.5
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-197 692.6 553 70.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 8.2e-197 691.0 602 66.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.7e-195 686.0 557 71.1
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-194 683.3 605 66.0
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.7e-194 683.3 605 66.0
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.6e-192 675.6 562 68.5
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.6e-192 675.6 562 68.5
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.4e-190 669.1 618 60.7
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 3.8e-186 655.6 402 86.1
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-184 650.6 641 61.8
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.3e-181 640.6 616 61.4
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.7e-179 632.9 570 64.9
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.8e-178 629.0 627 57.6
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.9e-177 626.7 671 55.6
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.0e-176 621.3 531 67.4
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 3.4e-166 589.3 470 67.0
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.7e-165 587.0 605 58.8
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 3.9e-162 575.9 619 57.2
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.9e-161 573.5 544 62.5
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.6e-155 553.9 559 56.5
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 6.0e-155 552.0 544 59.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.3e-149 534.3 357 81.0
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 9.6e-137 491.5 614 48.9
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.0e-130 471.5 504 57.9
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.8e-130 470.7 390 71.0
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.4e-124 450.3 625 46.6
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.2e-123 448.0 595 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.0e-117 428.3 554 48.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 5.5e-108 396.0 611 43.9
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 4.5e-102 376.3 573 46.1
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 3.7e-96 356.7 257 82.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-85 321.6 229 84.3
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.9e-77 293.9 483 41.0
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-69 268.5 180 87.8
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.3e-69 267.7 191 79.6
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.1e-67 261.2 202 66.8
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.7e-65 253.1 334 43.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.5e-62 243.8 322 46.6
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 5.0e-61 240.0 304 55.6
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.2e-56 224.6 291 43.3
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.5e-52 211.1 192 76.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 5.2e-50 203.4 168 62.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 8.9e-50 202.6 234 45.3
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 9.2e-47 192.6 130 77.7
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.3e-44 183.0 213 57.7
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.3e-42 177.9 103 93.2
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 3.4e-41 174.1 174 70.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 1.9e-39 168.3 241 49.8
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-38 165.2 83 91.6
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.6e-35 154.1 277 38.3
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-27 128.6 130 52.3
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-24 118.6 89 77.5
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 4.6e-22 110.5 59 86.4
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 3.0e-21 107.8 310 28.4
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.3e-19 102.4 75 70.7
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.8e-19 101.3 63 73.0
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.1e-18 99.4 106 56.6
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 4.9e-16 90.5 51 86.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.4e-15 87.0 72 68.1
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.4e-15 87.0 72 68.1
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 9.3e-15 86.3 91 47.3
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 9.3e-15 86.3 91 47.3
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 4.6e-14 84.0 169 34.3
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 6.7e-13 80.1 114 41.2
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.9e-12 78.6 53 66.0
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.3e-12 77.8 53 67.9
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 5.3e-10 70.5 141 33.3
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.3e-07 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.1e-06 58.5 34 88.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 4.6e-06 57.4 35 71.4
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 4.6e-06 57.4 58 53.4


User provided reference genes

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