Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 6.3e-149 530.8 276 100.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 6.6e-106 387.9 255 79.2
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 6.6e-106 387.9 255 79.6
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 2.2e-101 372.9 258 77.1
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.6e-99 365.2 255 75.3
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.5e-97 359.4 256 73.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.2e-94 350.5 263 74.1
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.0e-94 349.7 252 71.0
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.4e-94 348.6 252 71.8
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.9e-92 343.2 253 69.6
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.2e-92 342.4 252 72.2
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 7.1e-92 341.3 250 73.2
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 7.8e-91 337.8 252 71.0
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.3e-90 337.0 258 67.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.7e-90 336.7 255 69.4
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.3e-90 336.3 297 64.0
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.8e-88 329.3 262 67.6
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.5e-86 323.6 258 63.6
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.0e-86 323.2 258 67.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.0e-86 323.2 304 60.9
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.7e-85 320.1 264 64.8
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.9e-85 319.3 257 67.3
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.9e-85 319.3 262 66.0
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 8.4e-85 317.8 217 73.3
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 5.4e-84 315.1 215 71.2
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 9.2e-84 314.3 244 62.3
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.6e-83 313.5 260 65.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.6e-83 313.5 215 69.8
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.7e-83 312.8 213 70.0
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.0e-82 310.8 250 62.0
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.0e-82 310.8 250 62.0
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.3e-82 310.5 215 68.8
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.7e-82 310.1 250 64.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 2.3e-82 309.7 260 63.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 3.0e-82 309.3 261 65.1
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.0e-82 309.3 252 62.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 3.9e-82 308.9 216 69.0
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.9e-82 308.9 214 70.6
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.9e-82 308.9 219 70.3
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 8.7e-82 307.8 252 64.7
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.5e-81 306.2 254 59.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.5e-81 306.2 217 69.6
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.3e-81 305.8 213 73.7
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 3.3e-81 305.8 215 67.9
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 7.3e-81 304.7 229 65.5
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 7.3e-81 304.7 261 60.2
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.8e-80 302.8 256 59.8
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.8e-80 302.8 214 69.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.6e-80 302.4 212 67.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 3.6e-80 302.4 256 64.5
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.7e-80 302.0 218 67.9
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 6.2e-80 301.6 213 68.1
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 6.2e-80 301.6 253 61.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 8.1e-80 301.2 215 66.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.1e-79 300.8 216 68.5
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.1e-79 300.8 215 66.5
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.8e-79 300.1 215 67.4
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.4e-79 299.7 255 63.9
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.4e-79 299.7 255 63.9
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 3.1e-79 299.3 283 58.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 3.1e-79 299.3 221 67.9
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 3.1e-79 299.3 260 59.2
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.1e-79 299.3 257 57.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 4.0e-79 298.9 255 59.6
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 5.2e-79 298.5 215 66.5
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.0e-78 296.6 215 67.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.4e-78 295.8 215 64.7
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.6e-78 294.7 221 66.5
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 9.9e-78 294.3 241 61.8
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.1e-76 290.8 216 63.0
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.1e-76 290.8 259 58.3
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.9e-76 290.0 210 68.1
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.2e-76 289.3 215 62.8
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.2e-76 289.3 215 62.8
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 9.3e-76 287.7 267 56.9
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.2e-75 287.3 257 59.1
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.6e-75 287.0 267 56.9
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 2.7e-75 286.2 261 55.6
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.0e-75 285.0 267 56.6
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 7.8e-75 284.6 219 61.2
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.0e-74 284.3 217 66.4
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 8.7e-74 281.2 227 61.2
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.5e-73 279.6 241 60.6
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.1e-72 276.6 217 63.6
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.8e-72 276.2 217 64.5
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 3.6e-72 275.8 217 64.1
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.6e-72 275.8 217 64.1
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.6e-72 275.8 217 64.5
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.1e-71 274.2 217 63.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.4e-71 273.9 254 58.7
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-71 273.9 254 57.5
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.4e-71 273.9 254 57.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.4e-71 273.1 218 61.9
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.1e-71 272.7 213 63.8
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.1e-71 272.7 217 62.7
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-70 270.8 225 61.3
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-70 270.8 212 65.1
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.6e-70 269.6 219 63.0
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.6e-70 269.6 263 52.1
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 4.5e-70 268.9 219 62.6
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 4.5e-70 268.9 220 62.3
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.5e-70 268.9 212 65.1
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.5e-70 268.9 233 60.1
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 7.6e-70 268.1 217 61.3
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 8.4e-69 264.6 230 60.0
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.1e-68 264.2 184 71.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.1e-68 264.2 260 55.4
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.4e-68 263.8 225 60.0
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 4.6e-67 258.8 214 58.4
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.6e-67 258.8 212 59.4
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.3e-66 257.3 214 59.8
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.8e-66 256.9 282 49.6
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 3.9e-66 255.8 222 55.9
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.5e-65 253.8 282 49.3
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 3.4e-62 242.7 213 54.0
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 6.0e-59 231.9 169 63.9
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.5e-57 226.5 193 61.7
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.6e-57 225.3 212 55.7
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 3.1e-55 219.5 205 55.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.0e-55 219.2 224 49.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.0e-53 214.5 227 48.9
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.9e-50 202.6 221 50.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.2e-45 186.8 217 42.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-44 184.5 238 49.2
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 1.2e-43 181.0 268 39.6
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.4e-42 177.6 208 40.4
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.8e-42 177.2 123 69.9
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 7.4e-41 171.8 213 40.8
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.8e-39 167.2 209 40.2
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.6e-38 163.3 218 39.9
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.3e-37 161.0 115 71.3
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.9e-36 157.1 119 58.8
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-33 147.5 118 63.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.7e-33 145.6 93 74.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.7e-33 144.8 118 62.7
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.8e-31 140.6 121 55.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 6.7e-26 122.1 92 60.9
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 6.7e-26 122.1 92 60.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.8e-24 116.7 87 63.2
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.9e-21 106.7 108 50.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 6.5e-21 105.5 77 62.3
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.1e-20 104.8 88 53.4
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 2.5e-20 103.6 206 32.0
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.8e-18 97.4 64 75.0
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.5e-17 94.4 100 56.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 7.2e-12 75.5 57 57.9
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.7e-11 73.6 100 39.0
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.0e-10 69.7 92 39.1
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-08 63.5 51 56.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 5.4e-07 59.3 56 55.4
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 1.6e-06 57.8 49 59.2


User provided reference genes

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