Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 4.8e-32 140.6 73 100.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.1e-12 76.3 50 88.0
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.5e-12 75.1 49 87.8
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 2.5e-12 75.1 50 86.0
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 3.3e-12 74.7 49 85.7
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.3e-12 74.3 50 86.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.3e-12 74.3 50 86.0
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.3e-12 74.3 50 84.0
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 4.3e-12 74.3 50 86.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.2e-11 72.8 50 84.0
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.2e-11 72.8 50 84.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.2e-11 72.8 49 85.7
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-11 72.8 49 85.7
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.2e-11 72.8 49 85.7
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.6e-11 72.4 49 85.7
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-11 72.4 54 77.8
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.8e-11 71.6 49 83.7
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 3.6e-11 71.2 49 83.7
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 3.6e-11 71.2 49 83.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 3.6e-11 71.2 47 85.1
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 3.6e-11 71.2 50 82.0
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.6e-11 71.2 49 83.7
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 4.7e-11 70.9 49 83.7
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 4.7e-11 70.9 49 83.7
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 4.7e-11 70.9 49 83.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 4.7e-11 70.9 50 82.0
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 4.7e-11 70.9 50 82.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.7e-11 70.9 49 83.7
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 4.7e-11 70.9 49 83.7
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 4.7e-11 70.9 49 83.7
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 6.1e-11 70.5 49 83.7
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 6.1e-11 70.5 51 80.4
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 8.0e-11 70.1 49 81.6
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 8.0e-11 70.1 50 80.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 8.0e-11 70.1 50 80.0
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.0e-11 70.1 50 82.0
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.0e-10 69.7 50 82.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.0e-10 69.7 49 79.6
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.0e-10 69.7 50 82.0
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.0e-10 69.7 50 82.0
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.4e-10 69.3 49 81.6
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 1.4e-10 69.3 50 78.0
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.4e-10 69.3 49 81.6
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.4e-10 69.3 49 79.6
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.4e-10 69.3 49 79.6
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.4e-10 69.3 47 80.9
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.4e-10 69.3 48 81.2
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.8e-10 68.9 50 76.0
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 2.3e-10 68.6 42 88.1
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 2.3e-10 68.6 50 80.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 2.3e-10 68.6 49 81.6
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.3e-10 68.6 50 76.0
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 2.3e-10 68.6 49 81.6
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 2.3e-10 68.6 48 83.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 3.1e-10 68.2 48 79.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.1e-10 68.2 48 79.2
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 3.1e-10 68.2 49 79.6
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 3.1e-10 68.2 49 81.6
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.1e-10 68.2 50 80.0
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 4.0e-10 67.8 49 79.6
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 4.0e-10 67.8 49 79.6
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.0e-10 67.8 49 81.6
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 5.2e-10 67.4 46 80.4
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 5.2e-10 67.4 41 87.8
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 5.2e-10 67.4 47 78.7
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 5.2e-10 67.4 50 80.0
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 5.2e-10 67.4 50 78.0
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 8.9e-10 66.6 49 77.6
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 8.9e-10 66.6 49 77.6
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 8.9e-10 66.6 49 77.6
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 8.9e-10 66.6 49 77.6
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.9e-10 66.6 48 77.1
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.9e-10 66.6 48 77.1
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.9e-10 66.6 48 77.1
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 8.9e-10 66.6 49 75.5
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 8.9e-10 66.6 50 78.0
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.2e-09 66.2 51 72.5
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.5e-09 65.9 49 75.5
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 1.5e-09 65.9 49 79.6
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.0e-09 65.5 48 77.1
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 2.6e-09 65.1 50 76.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.6e-09 65.1 49 77.6
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.6e-09 65.1 49 77.6
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 3.4e-09 64.7 49 73.5
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 3.4e-09 64.7 49 77.6
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 3.4e-09 64.7 49 77.6
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 3.4e-09 64.7 49 77.6
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.4e-09 64.7 49 73.5
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 3.4e-09 64.7 49 75.5
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 4.4e-09 64.3 50 74.0
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 4.4e-09 64.3 50 74.0
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 5.8e-09 63.9 49 77.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 5.8e-09 63.9 50 74.0
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 7.5e-09 63.5 50 74.0
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 7.5e-09 63.5 50 74.0
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 9.8e-09 63.2 49 73.5
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 9.8e-09 63.2 49 73.5
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-08 62.8 49 75.5
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-08 62.8 49 75.5
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.3e-08 62.8 49 73.5
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.7e-08 62.4 50 70.0
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.7e-08 62.4 49 73.5
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 2.2e-08 62.0 49 71.4
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.2e-08 62.0 49 73.5
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.2e-08 62.0 49 73.5
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.2e-08 62.0 49 73.5
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.9e-08 61.6 49 75.5
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.9e-08 61.6 49 69.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 3.7e-08 61.2 49 75.5
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 4.9e-08 60.8 42 78.6
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 6.4e-08 60.5 49 69.4
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.3e-08 60.1 49 71.4
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 8.3e-08 60.1 49 71.4
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.1e-07 59.7 41 82.9
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.9e-07 58.9 49 69.4
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.7e-06 55.1 40 80.0


User provided reference genes

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