Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.0e-261 905.2 453 100.0
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 6.1e-226 787.3 435 90.8
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.4e-214 749.6 453 82.8
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 5.0e-212 741.1 453 82.3
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.3e-211 738.0 448 82.6
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.8e-210 735.3 454 80.6
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 6.8e-209 730.7 462 79.0
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.5e-208 729.6 456 80.9
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.2e-207 725.7 456 79.2
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.1e-206 723.4 463 78.4
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.2e-206 721.8 445 81.6
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 5.9e-205 717.6 455 78.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.3e-204 716.5 489 76.1
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.1e-203 713.4 455 78.9
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.5e-203 713.0 455 78.9
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.9e-203 712.6 455 78.0
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 3.3e-203 711.8 455 79.3
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 4.3e-203 711.4 457 76.6
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 7.3e-203 710.7 453 79.2
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.3e-203 710.7 455 78.9
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 7.3e-203 710.7 456 77.4
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 9.5e-203 710.3 454 79.3
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 9.5e-203 710.3 450 78.2
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 6.8e-201 704.1 450 80.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-200 703.0 533 68.7
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.4e-198 695.7 456 77.4
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.7e-197 692.2 471 73.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.0e-196 690.3 455 76.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.3e-196 689.1 425 82.6
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.6e-196 687.6 453 75.3
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.6e-194 681.8 448 76.8
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 8.1e-194 680.6 451 74.9
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.8e-193 679.5 454 75.8
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.3e-193 679.1 458 73.8
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.8e-193 677.6 458 74.0
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.2e-192 676.8 457 75.3
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.0e-192 676.0 455 76.7
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.6e-192 675.6 455 74.9
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.9e-191 672.2 458 73.6
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 2.9e-191 672.2 453 74.6
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 8.3e-191 670.6 458 73.8
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.9e-190 669.5 448 74.8
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.4e-190 669.1 456 73.7
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.1e-190 668.3 458 73.6
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.1e-190 668.3 455 74.5
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.6e-189 666.4 456 74.1
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.6e-189 666.4 455 75.4
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 1.6e-189 666.4 461 73.1
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 2.1e-189 666.0 455 74.5
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.7e-189 665.6 426 78.9
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.0e-188 663.7 453 73.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 2.3e-188 662.5 453 73.3
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 8.6e-188 660.6 474 71.1
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 8.6e-188 660.6 455 73.4
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 2.5e-187 659.1 465 71.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 4.3e-187 658.3 477 72.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 8.1e-186 654.1 450 74.7
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 8.1e-186 654.1 457 73.1
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.8e-185 652.9 448 73.9
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.1e-185 652.1 442 75.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 5.2e-185 651.4 442 75.6
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.2e-184 650.2 449 71.7
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.6e-184 649.0 483 69.2
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 4.4e-184 648.3 478 72.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.8e-184 647.9 454 72.7
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.7e-183 646.4 455 73.0
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.8e-183 645.2 454 72.7
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 4.9e-183 644.8 453 72.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 8.4e-183 644.0 459 73.4
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.9e-182 642.9 436 75.9
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.9e-182 642.9 454 72.0
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 7.1e-182 641.0 457 71.3
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 9.2e-182 640.6 454 72.0
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.2e-181 640.2 457 71.3
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.2e-181 640.2 448 75.0
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.2e-181 640.2 456 71.7
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.1e-181 639.4 449 71.3
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 4.6e-181 638.3 448 72.3
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.6e-181 638.3 457 70.9
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 4.6e-181 638.3 451 71.8
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.0e-181 637.9 452 72.6
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 6.0e-181 637.9 457 72.6
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 6.0e-181 637.9 454 71.8
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-180 636.7 458 71.4
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.3e-180 636.7 458 71.4
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.7e-180 636.3 451 72.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.3e-180 636.0 459 71.2
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 3.0e-180 635.6 453 71.1
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.0e-180 635.6 426 73.7
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.9e-180 635.2 471 71.8
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.5e-179 633.3 445 72.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.5e-179 633.3 454 71.8
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.9e-179 632.9 449 70.8
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.3e-179 632.1 449 71.3
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 9.6e-179 630.6 457 70.9
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 2.8e-178 629.0 457 71.8
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.8e-177 626.3 453 71.3
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.4e-177 625.9 453 71.1
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.4e-177 625.9 453 71.1
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.1e-177 625.5 449 72.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 3.4e-176 622.1 448 72.5
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 2.9e-175 619.0 455 70.8
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.4e-174 615.9 515 62.3
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.3e-172 609.4 452 70.8
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.0e-172 609.0 451 71.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.0e-172 609.0 451 70.7
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.3e-171 605.5 451 70.5
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 4.3e-171 605.1 453 70.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.4e-169 599.4 449 70.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 3.1e-169 599.0 455 69.7
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.2e-168 597.0 450 70.2
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.2e-168 597.0 455 69.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-168 596.7 453 69.1
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 2.0e-168 596.3 419 73.3
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.9e-167 591.7 437 68.6
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.1e-166 590.5 449 69.9
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 3.7e-162 575.5 421 72.0
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.4e-161 572.8 437 69.1
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.2e-160 570.5 447 66.0
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 4.5e-160 568.5 436 68.8
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.1e-155 553.9 464 64.0
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-155 553.1 425 64.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.9e-151 539.3 432 65.7
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.9e-151 538.5 452 63.1
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.0e-148 529.3 445 62.5
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.1e-145 520.8 415 68.0
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.1e-145 520.8 515 57.9
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.5e-136 490.3 428 57.9
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 7.7e-136 488.0 457 59.7
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.5e-134 483.0 322 74.5
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.2e-134 481.5 391 62.9
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.4e-129 467.2 287 80.8
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 3.2e-126 456.1 467 54.0
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 9.7e-123 444.5 451 53.9
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 2.2e-122 443.4 341 68.0
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 9.4e-110 401.4 454 50.0
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.4e-105 387.5 455 49.0
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-104 384.0 277 72.6
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-99 366.7 318 63.5
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.9e-95 353.2 319 60.8
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.8e-83 312.4 289 58.8
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 1.3e-82 311.2 193 79.8
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 5.1e-79 299.3 461 42.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.8e-77 293.5 192 74.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.6e-77 293.1 237 65.8
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 4.0e-76 289.7 261 60.9
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 8.9e-76 288.5 524 38.5
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.4e-75 286.6 192 75.5
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.7e-74 284.3 297 53.9
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.9e-73 280.8 231 63.6
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.4e-73 280.4 217 66.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.0e-71 275.0 184 75.0
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.1e-62 245.0 152 83.6
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 8.4e-58 228.8 213 55.9
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.6e-54 215.3 127 81.9
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.8e-53 213.0 169 60.9
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.2e-51 208.4 118 84.7
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.4e-51 206.8 274 47.1
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.2e-50 204.1 135 74.1
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.4e-50 202.6 170 60.6
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.2e-41 173.3 321 35.5
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.3e-39 168.3 301 37.2
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.5e-35 153.3 154 53.2
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 3.8e-34 150.2 293 33.8
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.5e-30 137.5 100 67.0
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 6.3e-29 132.9 154 51.3
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 5.3e-28 129.8 131 57.3
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.3e-28 129.8 93 67.7
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.7e-26 124.8 79 83.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 5.1e-23 113.2 126 51.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 3.3e-22 110.5 126 53.2
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.5e-19 101.7 74 70.3
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.0e-19 101.3 61 77.0
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 2.3e-15 87.8 52 86.5
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.1e-12 77.4 121 42.1
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.1e-12 77.0 46 87.0
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-11 73.2 51 70.6
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.7e-11 72.8 61 62.3
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 2.2e-10 71.2 113 41.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 6.5e-10 69.7 76 56.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.4e-09 65.9 55 60.0
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 2.7e-08 64.3 160 31.2
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.5e-06 58.5 36 69.4
arahy.Tifrunner.gnm1.ann1.6Q3TNQ Arachis hypogaea HOM05D000799 ORTHO05D000629 2.0e-06 58.2 92 38.0
Lsat_1_v5_gn_6_25880 Lactuca sativa HOM05D000267 ORTHO05D029881 3.3e-06 57.4 35 80.0


User provided reference genes

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