Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.3e-150 536.6 317 100.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 7.8e-95 351.3 307 77.2
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 9.3e-88 327.8 330 65.8
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 5.1e-86 322.0 310 62.9
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.1e-84 316.6 308 63.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 4.8e-84 315.5 336 67.9
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 1.1e-83 314.3 302 62.6
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.4e-83 313.9 310 63.5
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 5.3e-83 312.0 311 59.8
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 6.9e-83 311.6 310 65.5
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 7.6e-82 308.1 309 64.7
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.7e-81 307.0 306 68.3
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.7e-81 307.0 312 57.4
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 3.8e-81 305.8 309 64.4
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.1e-80 304.3 334 64.1
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.1e-80 304.3 309 68.0
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.4e-80 303.1 330 62.4
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 2.4e-80 303.1 307 65.8
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.1e-79 300.1 282 69.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 2.1e-79 300.1 310 64.8
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.7e-79 299.7 311 62.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.6e-79 298.9 366 61.5
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 6.0e-79 298.5 310 66.5
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 7.9e-79 298.1 307 68.4
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.3e-78 296.6 315 62.9
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 5.1e-78 295.4 282 66.0
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.1e-77 294.3 310 61.3
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 2.5e-77 293.1 317 57.7
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 4.3e-77 292.4 306 57.2
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 5.6e-77 292.0 307 62.9
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.6e-77 291.2 307 68.1
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 9.6e-77 291.2 324 63.9
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.3e-76 290.8 302 66.2
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.6e-76 290.4 306 66.7
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 2.1e-76 290.0 316 57.3
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.7e-76 289.3 318 63.8
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 6.2e-76 288.5 329 56.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.1e-75 287.7 311 60.8
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.1e-75 287.7 311 64.3
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 5.3e-75 285.4 310 60.3
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 6.9e-75 285.0 330 53.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.2e-74 284.3 314 61.5
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 2.0e-74 283.5 304 57.6
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 5.8e-74 282.0 331 63.1
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.0e-73 281.2 289 69.9
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.7e-73 280.4 308 65.3
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.2e-73 280.0 306 54.9
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.2e-73 280.0 315 66.0
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 2.9e-73 279.6 273 59.3
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 8.4e-73 278.1 342 57.0
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.4e-72 277.3 312 55.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 3.2e-72 276.2 315 60.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.2e-72 276.2 311 61.1
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 4.2e-72 275.8 303 59.7
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.5e-72 275.4 304 64.8
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.5e-72 275.4 304 64.8
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 7.1e-72 275.0 314 58.0
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 7.1e-72 275.0 315 60.0
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.6e-71 273.9 303 60.4
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.3e-70 270.8 295 66.1
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 8.7e-70 268.1 312 59.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.1e-69 267.7 335 50.7
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.5e-69 267.3 305 58.7
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 5.7e-69 265.4 313 58.5
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-69 265.4 345 60.0
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.6e-69 264.6 312 61.5
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.8e-68 263.1 312 52.6
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 6.3e-68 261.9 300 58.0
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 6.3e-68 261.9 312 51.6
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.4e-67 260.0 306 64.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 4.1e-67 259.2 297 62.0
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 6.9e-67 258.5 253 66.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.5e-66 257.3 305 57.0
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 7.6e-66 255.0 315 55.6
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.3e-65 254.2 317 55.2
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.3e-65 254.2 310 63.2
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.7e-65 253.8 183 72.7
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 1.7e-65 253.8 309 59.5
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 3.8e-65 252.7 335 55.2
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 4.2e-64 249.2 311 55.9
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 7.2e-64 248.4 308 55.5
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.5e-61 240.7 309 46.9
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.5e-61 240.0 315 58.1
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 7.4e-61 238.4 313 53.7
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 9.7e-61 238.0 286 63.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.8e-60 235.7 303 56.1
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 8.2e-60 235.0 304 54.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.1e-59 234.6 195 64.6
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.1e-59 234.6 304 49.0
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.8e-59 233.8 199 65.3
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 4.1e-59 232.6 303 52.8
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 4.1e-59 232.6 312 59.6
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 5.3e-59 232.3 306 46.7
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 5.3e-59 232.3 306 46.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 6.9e-59 231.9 314 55.4
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-58 230.3 306 49.0
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.0e-58 230.3 306 49.0
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.0e-58 230.3 306 49.0
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.7e-58 228.4 307 56.0
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.0e-57 228.0 312 53.2
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 1.9e-56 223.8 314 53.5
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 4.6e-55 219.2 306 48.7
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 7.9e-55 218.4 387 47.3
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 9.7e-53 211.5 303 58.1
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 9.7e-53 211.5 280 60.0
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 2.2e-52 210.3 331 55.3
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 7.7e-50 201.8 201 56.2
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.3e-49 201.1 275 57.1
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 6.3e-44 182.2 204 52.0
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.7e-41 174.1 157 58.6
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.1e-39 167.2 165 81.2
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.4e-37 159.5 194 51.5
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.5e-34 149.4 186 48.4
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 9.4e-32 141.7 104 68.3
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 3.0e-30 136.7 144 66.0
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 2.2e-28 130.6 134 54.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-27 128.3 214 42.1
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.5e-26 122.9 116 55.2
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.3e-25 121.3 141 51.8
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.5e-21 107.8 132 59.8
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 1.1e-19 101.7 146 41.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 1.5e-16 91.3 96 53.1
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 9.5e-16 88.6 95 52.6
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.0e-14 85.1 48 79.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.9e-12 77.0 116 49.1
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 4.9e-12 76.3 84 51.2
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.8e-11 74.3 83 51.8
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.8e-11 74.3 83 51.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-10 70.9 78 52.6
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 3.5e-10 70.1 56 69.6
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.6e-07 60.1 29 89.7
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.6e-07 60.1 59 50.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 8.0e-07 58.9 69 47.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.4e-06 58.2 59 47.5
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 2.3e-06 57.4 115 34.8
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 2.3e-06 57.4 76 40.8
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 3.1e-06 57.0 65 46.2
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 3.1e-06 57.0 64 50.0
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 3.1e-06 57.0 63 47.6
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 5.2e-06 56.2 60 50.0
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 5.2e-06 56.2 58 46.6
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 5.2e-06 56.2 60 46.7
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 6.8e-06 55.8 59 45.8
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 6.8e-06 55.8 58 46.6
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 8.9e-06 55.5 63 44.4
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 8.9e-06 55.5 54 51.9


User provided reference genes

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