Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.8e-113 412.9 227 100.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.0e-91 339.7 223 77.1
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.3e-90 337.0 205 82.9
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 8.5e-87 324.3 225 74.7
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 8.5e-87 324.3 227 70.9
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-86 323.9 226 75.2
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 7.2e-86 321.2 227 72.2
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.1e-85 319.7 227 70.9
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 7.9e-85 317.8 229 70.3
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.0e-84 317.4 224 71.4
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.8e-84 316.6 223 77.6
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 7.4e-83 311.2 225 68.4
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 9.7e-83 310.8 245 69.0
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.4e-81 307.0 227 66.1
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.4e-81 306.2 224 69.6
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.4e-81 306.2 227 70.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 4.1e-81 305.4 235 67.7
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.3e-81 305.1 221 66.5
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 7.0e-81 304.7 227 71.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 9.1e-81 304.3 227 70.0
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.5e-80 303.5 236 64.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 2.0e-80 303.1 240 71.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.0e-80 303.1 216 68.5
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.0e-79 300.8 226 66.4
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.3e-79 300.4 224 70.5
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.9e-78 296.6 232 71.6
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.5e-78 296.2 222 68.5
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.7e-77 292.7 237 63.7
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 3.6e-77 292.4 223 63.2
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.7e-77 292.0 227 62.6
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 6.1e-77 291.6 227 67.4
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 8.0e-77 291.2 216 68.5
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 8.0e-77 291.2 209 68.4
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 8.0e-77 291.2 225 72.9
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 8.0e-77 291.2 226 64.2
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.4e-76 290.4 221 64.3
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.8e-76 290.0 209 74.2
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.3e-76 289.7 208 75.0
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 3.9e-76 288.9 209 67.5
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 3.9e-76 288.9 226 64.2
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 5.2e-76 288.5 209 72.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 5.2e-76 288.5 209 70.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 5.2e-76 288.5 227 70.9
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 6.7e-76 288.1 227 62.1
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 6.7e-76 288.1 239 66.5
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.1e-75 287.3 212 66.0
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.5e-75 287.0 214 73.8
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.5e-75 287.0 225 64.9
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 2.6e-75 286.2 208 74.0
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.3e-75 285.8 207 73.9
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 5.7e-75 285.0 215 67.9
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.3e-74 283.9 209 75.6
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.3e-74 283.9 230 64.8
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 8.2e-74 281.2 215 63.7
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 8.2e-74 281.2 224 62.5
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.4e-73 280.4 217 69.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 1.8e-73 280.0 226 70.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.4e-73 279.6 204 66.2
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.2e-72 277.3 225 66.7
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.0e-72 276.6 217 62.7
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.0e-71 274.2 224 68.3
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.2e-71 273.1 227 62.6
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.9e-71 272.7 212 69.8
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 7.2e-70 268.1 192 74.5
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.2e-69 267.3 209 73.2
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 4.7e-69 265.4 216 60.6
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 8.0e-69 264.6 206 65.5
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.4e-68 263.8 202 63.4
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 6.8e-68 261.5 222 62.2
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.6e-67 259.6 227 59.5
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 5.7e-67 258.5 226 57.5
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 9.7e-67 257.7 221 58.8
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 3.7e-66 255.8 249 55.8
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 8.3e-66 254.6 206 58.3
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.8e-65 253.4 227 59.9
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-65 253.1 224 64.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-65 253.1 224 64.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.4e-65 253.1 211 59.7
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 3.1e-65 252.7 227 62.1
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.1e-65 252.3 232 59.9
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.1e-65 252.3 232 59.9
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.0e-64 250.0 227 62.1
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.5e-64 249.2 227 60.8
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.5e-64 249.2 232 60.8
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 7.7e-64 248.1 224 63.4
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.7e-64 248.1 224 63.4
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 7.7e-64 248.1 222 57.2
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 6.5e-63 245.0 227 59.9
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 6.5e-63 245.0 227 59.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.1e-62 244.2 227 59.9
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-62 244.2 227 59.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.5e-62 243.0 229 60.3
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 4.2e-62 242.3 209 63.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.2e-61 240.7 231 55.4
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 3.6e-61 239.2 232 59.1
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 3.6e-61 239.2 202 63.9
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 6.1e-61 238.4 200 59.5
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.0e-60 237.7 199 66.8
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.0e-60 237.7 197 58.9
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.4e-60 237.3 221 63.3
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 2.3e-60 236.5 209 56.9
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 4.0e-60 235.7 200 64.0
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 5.2e-60 235.3 222 59.0
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 2.0e-59 233.4 210 60.5
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.4e-59 232.6 227 57.3
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.4e-59 232.6 227 57.3
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 3.4e-59 232.6 199 58.3
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 4.8e-58 228.8 234 53.0
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.3e-58 228.4 201 64.7
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.1e-57 227.6 218 56.9
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 4.1e-57 225.7 232 56.0
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 3.8e-55 219.2 169 75.7
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 5.0e-55 218.8 199 54.8
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 6.6e-55 218.4 220 52.3
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.5e-54 217.2 220 51.8
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.3e-54 216.1 215 50.7
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 4.2e-54 215.7 228 57.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 4.2e-54 215.7 228 57.5
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 4.2e-54 215.7 156 68.6
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 5.5e-54 215.3 227 59.5
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 5.5e-54 215.3 227 56.8
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.1e-53 213.4 222 55.4
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.6e-53 212.6 211 56.4
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.6e-53 212.6 211 56.4
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 8.0e-53 211.5 181 57.5
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.0e-52 211.1 211 55.9
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.3e-52 209.9 201 54.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 5.7e-51 205.3 216 52.8
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 5.7e-51 205.3 158 63.3
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-49 200.7 183 60.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 7.8e-48 194.9 181 50.3
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.3e-47 194.1 208 59.6
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.3e-47 193.4 210 49.0
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 5.0e-47 192.2 169 67.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 7.5e-43 178.3 205 46.8
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 9.8e-43 177.9 202 47.5
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 2.2e-42 176.8 197 46.2
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.9e-41 173.7 228 43.0
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.2e-40 171.0 120 70.8
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.6e-40 170.6 196 47.4
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 3.5e-40 169.5 212 45.3
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.5e-40 169.5 226 45.1
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 4.6e-40 169.1 202 43.6
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 4.6e-40 169.1 202 43.6
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 7.8e-40 168.3 178 60.7
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.0e-39 167.9 206 43.2
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.3e-39 167.5 206 44.7
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 5.0e-39 165.6 193 44.0
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.9e-38 163.7 218 41.7
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.9e-38 163.7 241 40.2
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.6e-37 159.5 151 52.3
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 6.2e-37 158.7 224 36.6
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.0e-37 158.3 203 42.9
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 9.8e-35 151.4 220 35.9
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 5.6e-30 135.6 197 38.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 7.3e-30 135.2 131 56.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.6e-29 132.9 129 58.1
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.4e-25 120.9 154 40.9
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.7e-23 114.0 151 40.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.5e-22 110.9 196 36.2
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 6.8e-20 102.1 78 66.7
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 3.8e-18 96.3 73 65.8
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 3.2e-17 93.2 74 59.5
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.5e-14 83.6 63 58.7
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 2.5e-14 83.6 76 59.2
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 4.3e-14 82.8 67 59.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 9.6e-14 81.6 157 30.6
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.4e-09 67.8 51 66.7
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 4.2e-09 66.2 220 22.3
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 1.6e-08 64.3 223 24.7
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 6.0e-08 62.4 41 68.3


User provided reference genes

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