Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.6e-297 1025.4 532 100.0
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 7.0e-205 717.6 563 66.8
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 2.0e-199 699.5 536 70.0
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 5.0e-195 684.9 532 68.2
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.3e-192 676.0 547 66.0
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.0e-192 675.6 532 67.7
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 6.3e-190 667.9 532 66.4
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 9.5e-186 654.1 532 64.7
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 2.8e-185 652.5 506 68.8
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.6e-183 646.0 533 62.3
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 8.3e-182 641.0 532 63.9
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 2.7e-180 636.0 532 63.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.2e-177 627.1 516 64.7
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.3e-174 617.1 441 74.6
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.2e-172 610.5 536 60.8
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.0e-171 607.4 532 61.5
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.7e-171 606.7 541 60.6
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.5e-170 602.8 533 62.5
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 5.6e-170 601.7 552 58.9
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 9.5e-170 600.9 533 62.5
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.7e-169 598.6 531 60.6
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 5.2e-168 595.1 558 59.7
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.6e-167 592.8 538 60.8
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.6e-164 583.6 530 59.2
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 7.8e-164 581.3 540 58.3
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 7.8e-164 581.3 539 59.0
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 2.3e-163 579.7 536 59.1
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.9e-162 576.6 533 58.5
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 9.6e-162 574.3 541 58.4
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.4e-160 569.7 534 57.7
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 8.9e-160 567.8 532 59.0
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.2e-159 567.4 532 59.6
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.2e-159 567.4 532 59.0
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 7.6e-159 564.7 534 57.7
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 2.9e-158 562.8 535 57.8
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 4.9e-158 562.0 534 58.8
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.1e-156 556.6 536 57.8
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 6.6e-155 551.6 537 55.5
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 8.1e-153 544.7 532 54.3
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 4.0e-152 542.3 519 58.0
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 8.4e-150 534.6 555 57.3
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.2e-149 532.7 532 53.2
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 3.2e-149 532.7 537 53.8
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 5.4e-149 531.9 529 52.9
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.2e-148 530.8 536 54.1
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.7e-148 529.6 534 54.5
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 3.5e-148 529.3 536 53.5
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 4.6e-148 528.9 537 53.8
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 4.6e-148 528.9 534 54.7
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 6.0e-148 528.5 534 53.9
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.0e-147 527.7 531 53.3
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.7e-147 526.9 536 54.7
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 3.9e-147 525.8 534 55.2
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.5e-146 523.9 546 53.5
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.6e-146 521.9 540 51.5
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 3.6e-145 519.2 543 53.2
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.1e-144 516.2 532 54.5
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.0e-144 514.6 550 52.7
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.2e-143 514.2 534 53.4
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.5e-143 513.8 547 53.0
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.4e-143 512.7 530 53.4
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 9.9e-143 511.1 542 53.7
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.3e-142 510.8 547 52.8
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.2e-142 510.0 547 52.7
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 3.8e-142 509.2 550 51.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.4e-141 507.3 549 51.9
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.9e-141 506.9 534 52.4
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.7e-140 503.1 563 51.2
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.5e-140 502.7 611 47.0
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 7.9e-140 501.5 530 52.5
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 6.7e-139 498.4 539 52.3
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.5e-138 497.3 535 51.4
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 9.6e-138 494.6 559 50.8
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 8.1e-137 491.5 536 52.6
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.2e-135 487.6 532 51.5
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 2.2e-134 483.4 388 65.2
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 9.3e-133 478.0 532 50.0
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 7.9e-132 474.9 539 51.9
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.3e-131 474.2 536 48.3
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.9e-130 470.3 388 64.7
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.6e-129 467.2 509 50.9
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.5e-127 460.7 538 47.0
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.5e-126 455.3 678 44.0
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 8.4e-126 454.9 539 49.9
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.5e-125 453.4 553 46.3
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.5e-122 443.4 534 47.2
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 6.3e-121 438.7 541 46.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 8.2e-121 438.3 537 46.6
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 2.0e-119 433.7 541 45.5
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.0e-118 431.4 534 46.4
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.7e-118 430.6 538 45.5
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.5e-117 426.8 530 46.6
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.2e-116 424.5 537 45.8
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.4e-115 421.0 537 44.7
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.4e-115 421.0 537 44.7
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 3.0e-115 419.9 537 44.5
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.5e-114 417.5 532 45.9
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.7e-113 414.1 538 44.8
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 3.7e-113 412.9 333 65.2
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.1e-112 411.4 542 46.9
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 2.4e-112 410.2 439 52.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 5.3e-112 409.1 537 43.6
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 9.1e-112 408.3 536 44.6
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.5e-111 407.5 531 45.4
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.6e-111 406.8 539 43.8
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 3.4e-111 406.4 488 48.6
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.3e-110 404.4 551 43.9
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 2.9e-110 403.3 539 43.4
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.3e-106 389.8 530 44.0
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 7.4e-106 388.7 420 52.6
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.5e-101 373.6 466 47.2
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 7.2e-101 372.1 559 41.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 6.1e-100 369.0 565 40.9
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 2.0e-98 364.0 563 40.9
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.3e-97 361.3 272 72.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 1.1e-96 358.2 545 39.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.5e-90 337.8 277 65.7
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 3.7e-89 333.2 414 46.9
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.8e-88 330.9 345 53.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 5.0e-86 322.8 220 73.2
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.5e-85 321.2 539 39.5
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.0e-83 315.1 537 38.9
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.7e-73 280.0 356 44.7
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.0e-70 270.4 271 54.6
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.3e-69 266.9 270 54.4
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 4.7e-68 263.1 373 46.6
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.3e-65 255.0 492 38.2
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.0e-62 243.8 454 36.6
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.8e-60 237.3 447 36.0
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.7e-57 226.9 144 76.4
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 1.9e-56 224.6 331 44.1
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.1e-40 172.2 247 43.3
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.3e-38 165.2 184 48.4
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 3.3e-37 160.6 154 50.6
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 5.6e-37 159.8 154 51.3
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 5.3e-35 153.3 149 50.3
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 5.8e-34 149.8 660 25.6
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.7e-33 148.3 166 48.2
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.2e-31 142.1 141 56.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 4.3e-29 133.7 214 37.9
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.8e-28 131.0 174 43.1
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 8.1e-28 129.4 537 25.3
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 7.6e-26 122.9 176 43.8
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 4.9e-25 120.2 139 48.2
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.0e-22 112.5 188 33.0
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.6e-15 87.0 264 29.2
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.9e-13 81.6 195 31.3
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.4e-11 75.5 95 48.4
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 2.2e-09 68.2 98 39.8
CAN.G142.9 Capsicum annuum HOM05D000388 ORTHO05D000473 1.9e-08 65.1 103 38.8
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 3.2e-08 64.3 118 39.0


User provided reference genes

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