Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 2.9e-42 174.9 91 100.0
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 1.8e-23 112.5 91 67.0
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 1.2e-19 99.8 97 59.8
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 2.9e-18 95.1 96 59.4
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 5.0e-18 94.4 106 51.9
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 6.5e-18 94.0 96 57.3
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 8.5e-18 93.6 91 56.0
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 8.5e-18 93.6 89 57.3
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 8.5e-18 93.6 96 57.3
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.1e-17 93.2 92 57.6
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 1.4e-17 92.8 96 55.2
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 1.9e-17 92.4 96 57.3
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.9e-17 92.4 96 57.3
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 1.9e-17 92.4 97 53.6
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 4.2e-17 91.3 92 57.6
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 5.5e-17 90.9 96 55.2
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 5.5e-17 90.9 96 57.3
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 7.2e-17 90.5 105 55.2
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 9.3e-17 90.1 85 56.5
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 9.3e-17 90.1 93 55.9
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.2e-16 89.7 98 54.1
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 1.6e-16 89.4 96 54.2
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 1.6e-16 89.4 98 53.1
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 2.1e-16 89.0 93 58.1
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 2.7e-16 88.6 99 55.6
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 2.7e-16 88.6 91 54.9
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 2.7e-16 88.6 98 59.2
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 2.7e-16 88.6 95 53.7
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 4.6e-16 87.8 91 56.0
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 4.6e-16 87.8 101 52.5
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 6.1e-16 87.4 84 59.5
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 1.0e-15 86.7 88 56.8
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 1.4e-15 86.3 93 54.8
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.8e-15 85.9 91 53.8
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 1.8e-15 85.9 70 61.4
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 2.3e-15 85.5 98 53.1
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 2.3e-15 85.5 94 55.3
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 2.3e-15 85.5 88 55.7
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 2.3e-15 85.5 89 55.1
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 2.3e-15 85.5 93 52.7
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 3.9e-15 84.7 93 52.7
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 3.9e-15 84.7 70 65.7
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 6.7e-15 84.0 115 48.7
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 6.7e-15 84.0 105 52.4
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.1e-14 83.2 93 53.8
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.1e-14 83.2 90 55.6
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 1.1e-14 83.2 76 57.9
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 1.5e-14 82.8 104 51.0
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 1.9e-14 82.4 100 49.0
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 1.9e-14 82.4 107 45.8
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 2.5e-14 82.0 96 47.9
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 3.3e-14 81.6 101 49.5
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 4.3e-14 81.3 89 51.7
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 9.7e-14 80.1 103 48.5
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.3e-13 79.7 100 51.0
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 2.2e-13 79.0 96 50.0
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 4.8e-13 77.8 69 60.9
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 8.2e-13 77.0 66 66.7
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 4.1e-12 74.7 65 58.5
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 6.9e-12 73.9 79 49.4
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 9.1e-12 73.6 65 56.9
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 1.5e-11 72.8 49 75.5
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 5.0e-10 67.8 55 60.0
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 6.5e-10 67.4 60 53.3
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 6.5e-10 67.4 61 54.1
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 1.9e-09 65.9 46 69.6
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 3.2e-09 65.1 92 42.4
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 7.2e-09 63.9 50 62.0
Haze_25223 Corylus avellana HOM05D008093 ORTHO05D009840 2.1e-08 62.4 67 53.7
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 2.7e-08 62.0 89 43.8
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 3.6e-08 61.6 93 39.8
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 3.6e-08 61.6 92 43.5
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 1.0e-07 60.1 93 41.9
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 1.0e-07 60.1 93 41.9
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 1.4e-07 59.7 95 44.2
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 1.8e-07 59.3 92 40.2
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 3.9e-07 58.2 89 42.7
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 3.9e-07 58.2 89 42.7
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 3.9e-07 58.2 49 53.1
Cpa.g.sc42.146 Carica papaya HOM05D008093 ORTHO05D009840 5.1e-07 57.8 60 53.3
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 6.7e-07 57.4 79 41.8
Glyma.04G241800 Glycine max HOM05D009255 ORTHO05D011239 6.7e-07 57.4 55 49.1
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 2.0e-06 55.8 95 41.1
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 2.0e-06 55.8 95 41.1
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 2.0e-06 55.8 95 37.9
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 2.6e-06 55.5 95 37.9
Phvul.009G134100 Phaseolus vulgaris HOM05D009255 ORTHO05D011239 2.6e-06 55.5 55 49.1
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 2.6e-06 55.5 63 39.7
Glyma.06G121600 Glycine max HOM05D009255 ORTHO05D011239 4.4e-06 54.7 55 47.3
VMungo1309G1730 Vigna mungo HOM05D009255 ORTHO05D011239 4.4e-06 54.7 55 49.1
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 5.7e-06 54.3 89 42.7
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 5.7e-06 54.3 94 41.5


User provided reference genes

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