Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 8.8e-82 307.0 165 100.0
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.1e-51 206.1 148 77.7
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.8e-51 205.7 148 78.4
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.8e-51 205.7 148 73.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.6e-51 205.3 148 76.4
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 8.1e-51 204.1 148 77.7
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.8e-50 203.0 148 75.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 2.3e-50 202.6 148 75.7
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 4.0e-50 201.8 148 75.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.9e-50 200.7 148 77.0
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 5.8e-49 198.0 148 74.3
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 7.5e-49 197.6 142 74.6
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-48 196.1 148 73.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.7e-48 195.3 148 73.6
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.7e-48 195.3 148 73.6
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.7e-48 195.3 148 73.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 8.3e-48 194.1 148 73.6
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.4e-47 193.4 151 69.5
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.2e-47 192.2 142 73.2
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.1e-47 191.8 142 73.2
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 4.1e-47 191.8 147 72.1
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 7.1e-47 191.0 148 71.6
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 7.1e-47 191.0 142 73.2
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 7.1e-47 191.0 148 70.3
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 7.1e-47 191.0 148 72.3
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.2e-46 190.3 141 73.8
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.6e-46 189.9 148 70.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.6e-46 189.9 140 70.7
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.7e-46 189.1 150 69.3
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 7.8e-46 187.6 148 71.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.3e-45 186.8 148 70.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.3e-45 186.0 142 71.8
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.3e-45 186.0 140 72.1
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 2.3e-45 186.0 149 68.5
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 3.9e-45 185.3 148 67.6
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 6.6e-45 184.5 140 70.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 6.6e-45 184.5 149 67.8
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 8.6e-45 184.1 148 68.9
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.1e-44 183.7 137 71.5
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.1e-44 183.7 149 67.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.5e-44 182.6 142 69.7
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.5e-44 182.6 148 68.2
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.3e-44 182.2 148 68.9
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 4.3e-44 181.8 148 67.6
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 5.6e-44 181.4 148 64.9
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.2e-43 180.3 146 69.2
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.2e-43 180.3 148 66.9
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-43 180.3 140 69.3
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.2e-43 180.3 148 66.2
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.1e-42 177.2 148 66.9
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 3.1e-42 175.6 141 67.4
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-42 174.9 148 66.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 5.2e-42 174.9 144 68.1
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.9e-42 174.1 146 64.4
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 8.9e-42 174.1 153 66.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.2e-41 173.7 148 65.5
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.2e-41 173.7 150 66.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 2.0e-41 172.9 132 72.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.4e-41 172.2 145 63.4
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.4e-41 171.8 148 65.5
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.6e-41 171.0 148 64.9
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.9e-41 170.6 148 66.2
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.3e-40 170.2 148 62.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 5.4e-39 164.9 148 60.1
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 9.2e-39 164.1 140 68.6
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.6e-38 161.8 143 64.3
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 6.0e-38 161.4 121 73.6
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-37 159.8 143 63.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.7e-37 159.8 143 63.6
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 8.6e-37 157.5 148 60.1
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.6e-37 157.5 146 61.6
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.1e-36 157.1 119 71.4
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.5e-36 156.0 120 75.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.3e-36 155.6 120 75.0
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.3e-36 155.6 138 62.3
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 4.3e-36 155.2 148 60.1
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 4.3e-36 155.2 141 58.2
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.6e-36 154.8 138 62.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 9.6e-36 154.1 119 74.8
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 9.6e-36 154.1 119 74.8
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-35 153.7 112 76.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.1e-35 152.9 119 69.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 4.7e-35 151.8 120 70.8
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 6.2e-35 151.4 116 73.3
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-34 150.6 118 68.6
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.4e-34 150.2 145 56.6
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 3.1e-34 149.1 142 58.5
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 5.2e-34 148.3 148 63.5
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 6.9e-34 147.9 142 58.5
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.9e-34 147.9 123 65.0
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.9e-34 147.5 148 56.8
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.9e-34 147.5 148 56.8
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 5.8e-33 144.8 148 58.8
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.3e-32 143.7 149 56.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.2e-32 142.9 148 55.4
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 4.9e-32 141.7 142 55.6
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 4.9e-32 141.7 142 56.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 6.4e-32 141.4 125 62.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 6.4e-32 141.4 142 55.6
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 6.4e-32 141.4 142 56.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-31 140.6 142 55.6
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.1e-31 140.6 142 55.6
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.1e-31 140.6 142 55.6
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.1e-31 140.6 142 55.6
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.1e-31 140.6 142 55.6
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.9e-31 139.8 142 54.2
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 5.4e-31 138.3 142 54.9
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 7.1e-31 137.9 142 54.2
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.2e-30 137.1 140 56.4
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.0e-30 134.8 149 55.0
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 7.8e-30 134.4 134 59.0
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 2.5e-28 129.4 149 55.7
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 6.2e-27 124.8 112 59.8
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 4.0e-26 122.1 111 60.4
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 3.4e-25 119.0 134 54.5
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.2e-22 110.5 142 45.1
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.6e-22 110.2 76 80.3
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.3e-21 106.3 96 59.4
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.1e-21 105.1 79 69.6
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 9.6e-20 100.9 119 51.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-16 89.7 102 51.0
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.8e-16 89.0 102 51.0
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.1e-15 87.4 90 57.8
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.9e-15 86.7 75 64.0
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 5.5e-15 85.1 60 76.7
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.5e-14 82.4 57 77.2
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 7.9e-14 81.3 90 52.2
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.3e-13 79.7 94 52.1
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.7e-13 77.8 69 59.4
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.8e-10 70.1 73 60.3
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.9e-10 68.2 104 47.1
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.9e-10 68.2 104 47.1
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 3.8e-08 62.4 128 35.2
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 6.5e-08 61.6 136 33.8
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-07 60.1 69 52.2


User provided reference genes

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