Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 6.7e-188 660.6 350 100.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.4e-137 493.4 292 90.8
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 2.0e-128 463.0 293 86.7
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 7.8e-128 461.1 294 85.7
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.0e-119 432.6 292 82.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 2.5e-118 429.5 325 76.3
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.5e-118 429.5 299 80.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.6e-117 426.8 308 76.6
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.3e-114 417.2 295 76.9
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.7e-114 416.8 301 77.4
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.2e-112 410.6 296 75.0
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.1e-112 409.8 301 77.1
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.1e-110 404.1 294 76.5
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 5.6e-110 401.7 300 75.3
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.2e-109 400.6 294 77.2
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 2.8e-109 399.4 294 77.2
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.8e-109 399.4 297 76.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.6e-109 399.1 364 65.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 4.7e-109 398.7 297 75.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 6.2e-109 398.3 299 75.6
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.2e-107 394.0 294 76.2
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.5e-107 393.7 307 73.0
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.4e-107 392.5 303 73.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 9.9e-107 391.0 297 75.1
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 4.9e-106 388.7 292 75.3
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.1e-105 387.5 319 67.7
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.2e-104 384.0 295 71.2
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.7e-103 380.2 295 75.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.9e-103 379.0 298 73.5
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.9e-103 379.0 301 73.8
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.6e-103 377.9 301 73.4
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 8.6e-103 377.9 298 72.5
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.1e-102 377.5 291 70.4
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.1e-102 377.5 293 71.0
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.5e-102 377.1 293 71.0
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 5.6e-102 375.2 292 73.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.3e-102 374.8 301 72.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.2e-101 374.0 297 72.7
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.6e-101 373.6 297 73.1
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.8e-101 372.9 301 72.8
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 8.1e-101 371.3 319 67.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.4e-100 370.5 293 73.0
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 5.2e-100 368.6 295 71.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.6e-99 366.3 294 69.7
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 3.4e-99 365.9 295 72.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.9e-98 362.8 297 71.0
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 3.8e-98 362.5 296 72.0
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 8.4e-98 361.3 295 69.2
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 7.1e-97 358.2 295 71.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-96 357.5 299 70.6
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.2e-96 357.5 298 71.5
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.6e-96 357.1 295 71.9
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.1e-96 356.7 342 62.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.3e-95 353.2 298 70.1
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 6.6e-95 351.7 300 69.7
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 6.6e-95 351.7 290 68.3
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 8.7e-95 351.3 299 69.9
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 7.3e-94 348.2 309 67.0
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.1e-93 346.7 295 68.1
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.8e-93 346.3 298 69.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 2.4e-92 343.2 298 68.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 6.9e-92 341.7 292 68.8
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 9.0e-92 341.3 298 65.4
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.5e-91 340.5 260 74.2
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 3.4e-91 339.3 294 69.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 7.6e-91 338.2 297 68.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 7.6e-91 338.2 300 67.0
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.9e-90 336.3 296 65.5
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.1e-89 334.3 308 65.3
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 3.2e-89 332.8 299 63.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.6e-88 330.5 299 67.6
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.3e-87 327.4 288 68.4
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.7e-87 327.0 304 62.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.7e-87 327.0 295 69.8
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.0e-87 326.2 293 63.5
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.0e-87 326.2 293 63.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.9e-87 325.9 301 66.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.9e-87 325.9 328 60.7
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.3e-86 322.4 311 62.7
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 5.6e-86 322.0 291 66.0
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 7.3e-86 321.6 299 68.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 7.3e-86 321.6 296 65.5
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 8.1e-85 318.2 293 64.5
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-84 317.8 297 64.0
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.4e-84 316.6 296 63.5
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.5e-83 313.9 294 66.0
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.5e-83 313.9 271 69.4
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 5.8e-83 312.0 310 61.6
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.7e-82 310.5 301 64.1
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 6.4e-82 308.5 294 62.9
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 6.4e-82 308.5 299 62.2
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 4.2e-81 305.8 294 62.6
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.1e-80 303.5 271 66.4
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.1e-79 298.9 293 63.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.7e-79 298.1 304 60.9
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 8.7e-79 298.1 297 62.3
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-78 297.4 297 63.6
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 5.6e-78 295.4 294 62.2
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 5.6e-78 295.4 294 62.2
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-77 294.3 297 60.6
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.4e-76 290.8 305 60.3
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.4e-76 290.8 336 55.7
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 9.0e-76 288.1 267 68.5
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 5.8e-75 285.4 288 62.5
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.4e-73 280.8 313 55.9
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.4e-73 280.8 308 57.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.1e-73 278.5 303 59.4
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 3.3e-70 269.6 310 54.8
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 5.6e-70 268.9 276 61.6
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.8e-69 265.8 276 60.1
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 6.2e-69 265.4 266 63.2
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.6e-67 260.0 274 60.2
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 7.6e-67 258.5 267 64.0
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.3e-66 257.7 329 52.9
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.9e-66 255.8 310 54.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.9e-65 253.8 152 88.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.7e-64 250.0 230 63.9
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.9e-62 243.8 305 53.4
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 3.3e-62 243.0 181 75.1
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 4.1e-60 236.1 296 53.0
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 6.5e-58 228.8 265 55.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 4.2e-57 226.1 193 67.9
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.2e-57 225.3 342 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.6e-56 224.2 301 51.2
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 3.9e-55 219.5 197 65.5
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 2.8e-53 213.4 309 46.6
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 9.4e-49 198.4 265 51.3
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.8e-44 184.1 349 41.0
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-43 180.3 210 54.8
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.6e-43 180.3 342 39.8
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.2e-41 173.3 137 72.3
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.0e-39 168.3 257 47.5
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 5.3e-36 156.0 293 42.0
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.2e-30 138.3 423 33.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.6e-22 110.5 115 56.5
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-18 97.4 94 63.8
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 8.6e-18 95.5 65 70.8
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.9e-17 94.4 228 39.5
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 2.5e-17 94.0 65 70.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.1e-16 90.9 108 55.6
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 6.1e-16 89.4 64 68.8
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.0e-14 84.3 82 51.2
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 8.9e-07 58.9 108 39.8
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.5e-06 58.2 37 70.3


User provided reference genes

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