Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 2.0e-231 805.4 409 100.0
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 1.6e-169 599.7 404 77.5
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 1.7e-105 387.1 387 56.8
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 2.6e-82 310.1 404 48.3
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 3.2e-80 303.1 341 53.7
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 7.8e-79 298.5 411 46.5
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 1.8e-75 287.3 395 47.8
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 1.7e-73 280.8 386 45.9
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 7.1e-64 248.8 263 53.2
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 1.1e-61 241.5 342 44.7
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 3.6e-60 236.5 364 42.3
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 6.8e-59 232.3 324 42.0
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 7.6e-58 228.8 310 46.1
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 9.9e-58 228.4 276 48.6
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 3.8e-57 226.5 341 43.4
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 1.1e-56 224.9 287 46.7
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 2.4e-56 223.8 366 39.1
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 3.2e-56 223.4 242 54.1
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 7.1e-56 222.2 318 41.8
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 1.2e-55 221.5 317 40.7
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 1.2e-55 221.5 318 41.5
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 2.7e-55 220.3 333 39.3
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 1.3e-54 218.0 373 37.8
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 1.9e-53 214.2 270 47.8
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 2.5e-53 213.8 347 41.5
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 5.6e-53 212.6 321 40.5
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 9.6e-53 211.8 298 42.3
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 9.6e-53 211.8 286 45.5
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 6.2e-52 209.1 321 39.9
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 6.2e-52 209.1 334 40.1
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 8.1e-52 208.8 272 45.6
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.1e-51 208.4 355 41.4
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 1.8e-51 207.6 325 39.4
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 3.1e-51 206.8 358 38.5
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 6.9e-51 205.7 275 43.6
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 1.5e-50 204.5 297 43.1
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 2.6e-50 203.8 342 38.3
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 5.8e-50 202.6 260 45.8
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 7.6e-50 202.2 282 44.7
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 1.3e-49 201.4 374 38.0
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 7.1e-48 195.7 275 45.1
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 9.3e-48 195.3 317 40.1
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 1.2e-47 194.9 273 44.3
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 2.7e-47 193.7 378 37.6
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 4.6e-47 193.0 346 36.4
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 6.0e-47 192.6 282 40.8
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 3.0e-46 190.3 294 40.5
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 3.0e-46 190.3 272 43.0
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 3.0e-46 190.3 271 42.4
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 6.6e-46 189.1 359 38.4
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 8.7e-46 188.7 340 37.1
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 7.3e-45 185.7 346 37.6
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 1.3e-44 184.9 308 42.2
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 2.8e-44 183.7 365 39.5
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 1.1e-43 181.8 296 40.2
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 2.3e-38 164.1 278 43.2
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 6.7e-38 162.5 300 37.7
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 3.7e-36 156.8 272 39.0
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 3.7e-36 156.8 315 35.6
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.3e-35 152.9 268 37.7
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 2.0e-34 151.0 397 30.5
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 5.8e-34 149.4 262 38.2
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 8.4e-33 145.6 283 37.8
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 8.4e-33 145.6 395 30.4
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 4.2e-32 143.3 151 49.7
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 4.8e-28 129.8 495 27.5
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 4.1e-27 126.7 218 37.6
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 6.9e-27 125.9 378 29.9
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 1.5e-26 124.8 378 30.4
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.6e-26 124.0 136 47.8
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 7.6e-26 122.5 149 44.3
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 1.3e-25 121.7 117 50.4
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.2e-25 120.9 117 50.4
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 2.9e-25 120.6 136 47.1
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 6.5e-25 119.4 115 48.7
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 1.4e-24 118.2 147 42.2
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 1.9e-24 117.9 288 32.3
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 5.5e-24 116.3 116 50.9
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 6.1e-23 112.8 137 47.4
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 7.9e-23 112.5 158 39.9
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 5.1e-22 109.8 127 44.9
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 1.3e-20 105.1 264 31.1
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 5.9e-18 96.3 225 34.2
TAR381G0297 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.4e-14 85.1 116 43.1
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 5.7e-13 79.7 362 29.6
Peaxi162Scf01290g00019 Petunia axillaris HOM05D007736 ORTHO05D009783 7.4e-13 79.3 264 30.3
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 1.7e-12 78.2 343 28.3
HPP92_001092 Vanilla planifolia HOM05D007736 ORTHO05D009783 7.9e-07 59.3 241 28.2
Actinidia05640 Actinidia chinensis HOM05D007736 ORTHO05D009783 3.9e-06 57.0 63 54.0


User provided reference genes

Program Settings